Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021922
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55920.1 68418.m06975 nucleolar protein, putative similar to ...    30   1.7  
At4g20740.1 68417.m03014 pentatricopeptide (PPR) repeat-containi...    28   6.8  
At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family pr...    28   6.8  
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    28   6.8  
At1g23480.2 68414.m02946 glycosyl transferase family 2 protein s...    28   6.8  
At1g23480.1 68414.m02945 glycosyl transferase family 2 protein s...    28   6.8  
At5g19100.1 68418.m02272 extracellular dermal glycoprotein-relat...    27   9.0  
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ...    27   9.0  
At2g30650.1 68415.m03738 3-hydroxyisobutyryl-coenzyme A hydrolas...    27   9.0  
At1g31500.3 68414.m03859 endonuclease/exonuclease/phosphatase fa...    27   9.0  
At1g31500.2 68414.m03858 endonuclease/exonuclease/phosphatase fa...    27   9.0  
At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase fa...    27   9.0  

>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
           SP|P46087 Proliferating-cell nucleolar antigen p120
           (Proliferation-associated nucleolar protein p120) {Homo
           sapiens}, SP|P40991 Nucleolar protein NOP2
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 682

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 254 EMLKQKEDKIGQKNEMLKIDVENNEVPPPIVYEKQEVNENKLDWFNVTDD 403
           ++ K K   +  +  MLK   ++   PP    +K+ V E  L+ + VTDD
Sbjct: 22  QLTKSKTPPMKPQTSMLKKGAKSQNKPPLKKQKKEVVEEEPLEDYEVTDD 71


>At4g20740.1 68417.m03014 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 727

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = +2

Query: 230 NSLSRTGFEMLKQKEDKIGQKNEMLKIDVENNEVPPPIVYEKQEVNENKLDWFNVTDDGA 409
           N L R G E+     D + Q  ++L  D E N +   + Y  +      +  +N+  +  
Sbjct: 459 NVLERIG-ELGYPVSDYLTQFFKLLCADEEKNAMALDVFYILKTKGHGSVSVYNILMEAL 517

Query: 410 ACMEDIQNEIANI-DLKETKWNPDAPEFSL 496
             M DIQ  ++   ++++  + PD+  +S+
Sbjct: 518 YKMGDIQKSLSLFYEMRKLGFEPDSSSYSI 547


>At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family
           protein similar to the myc family of helix-loop-helix
           transcription factors; contains Pfam profile PF00010:
           Helix-loop-helix DNA-binding domain; PMID: 12679534
          Length = 423

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 158 LMFVCRKHFTKWCTMYILYWQNR*GDRISDLTLQWCNFHYC 36
           L FV      +W   Y+++WQ    D+     L W + H+C
Sbjct: 39  LRFVVETSPDRWA--YVIFWQKMFDDQSDRSYLVWVDGHFC 77


>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 606 KSGKYFYFYQAEDGQQVFWNSLNVRIL 686
           K    + FYQ+ DGQ +  ++LNV+ L
Sbjct: 516 KDNDAYNFYQSVDGQHIILHTLNVKCL 542


>At1g23480.2 68414.m02946 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535 isoform contains GG
           acceptor splice site at intron 1
          Length = 484

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 233 YFCGIYFFQYLGFYFISYPF 174
           +FCG Y F Y G YF  Y F
Sbjct: 444 FFCGCYDFAYGGSYFYVYLF 463


>At1g23480.1 68414.m02945 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535 isoform contains GG
           acceptor splice site at intron 1
          Length = 556

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 233 YFCGIYFFQYLGFYFISYPF 174
           +FCG Y F Y G YF  Y F
Sbjct: 516 FFCGCYDFAYGGSYFYVYLF 535


>At5g19100.1 68418.m02272 extracellular dermal glycoprotein-related
           / EDGP-related low similarity to extracellular dermal
           glycoprotein EDGP precursor [Daucus carota] GI:285741,
           SP|P13917 Basic 7S globulin precursor {Glycine max}
          Length = 391

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 536 IPS*VEACIEYPHLERIQEHQGSIWFLSNQYLLFHFEYLPY 414
           +P  +  C+  P  ER Q H G +W    +Y      YLPY
Sbjct: 179 LPHKIALCL--PSTERSQSHNGDLWIGKGEYY-----YLPY 212


>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 681

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 515 CIEYPHLERIQEHQGSIWFLSN 450
           C+ YPH+ RI  HQ  I F S+
Sbjct: 260 CMGYPHVIRISRHQHRISFASS 281


>At2g30650.1 68415.m03738 3-hydroxyisobutyryl-coenzyme A hydrolase,
           putative / CoA-thioester hydrolase, putative strong
           similarity to gi:8572760; contains Pfam profile PF00388
           enoyl-CoA hydratase/isomerase family protein
          Length = 422

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 608 FCLSISVMYLFVSVLSVSDRKTSFIPS*VEACIEYPHLER 489
           F  SIS+  L   +  V     +FI + ++A  EYPHL +
Sbjct: 229 FVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQ 268


>At1g31500.3 68414.m03859 endonuclease/exonuclease/phosphatase
           family protein low similarity to SP|P31384
           Glucose-repressible alcohol dehydrogenase
           transcriptional effector (Carbon catabolite repressor
           protein 4) {Saccharomyces cerevisiae}; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 283

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 81  IPSSILPIENIHSAPFCKMFSANKHQIHEILKRVRNEIETQILEEIDTTEIVY 239
           + S++LP    HS P C  + A  H I  +LK +  + +   L+E+D  +  Y
Sbjct: 71  VKSALLP----HSPPACLKWKARSHAILSVLKNL--QADFFCLQEVDEYDSFY 117


>At1g31500.2 68414.m03858 endonuclease/exonuclease/phosphatase
           family protein low similarity to SP|P31384
           Glucose-repressible alcohol dehydrogenase
           transcriptional effector (Carbon catabolite repressor
           protein 4) {Saccharomyces cerevisiae}; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 383

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 81  IPSSILPIENIHSAPFCKMFSANKHQIHEILKRVRNEIETQILEEIDTTEIVY 239
           + S++LP    HS P C  + A  H I  +LK +  + +   L+E+D  +  Y
Sbjct: 71  VKSALLP----HSPPACLKWKARSHAILSVLKNL--QADFFCLQEVDEYDSFY 117


>At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase
           family protein low similarity to SP|P31384
           Glucose-repressible alcohol dehydrogenase
           transcriptional effector (Carbon catabolite repressor
           protein 4) {Saccharomyces cerevisiae}; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 388

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 81  IPSSILPIENIHSAPFCKMFSANKHQIHEILKRVRNEIETQILEEIDTTEIVY 239
           + S++LP    HS P C  + A  H I  +LK +  + +   L+E+D  +  Y
Sbjct: 76  VKSALLP----HSPPACLKWKARSHAILSVLKNL--QADFFCLQEVDEYDSFY 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,327,622
Number of Sequences: 28952
Number of extensions: 259406
Number of successful extensions: 792
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)