Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021921
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)              29   2.8  
SB_2114| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  

>SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)
          Length = 416

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 514 CGNSSQNCQTQASSFQIEDCTEAQKDWD*GTKKSSETCY*ST*GSEEGCK 663
           CGN + NC  +A +   E  +    DW       +ETC      SEE C+
Sbjct: 129 CGNGTSNCNCEACTDFSEVISAELYDW----VPQNETCVVKNYSSEEACR 174


>SB_2114| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 548 AWVWQFWLLLPQPFS*RFSTRLSLQC 471
           +WVW  W+L+ QP S R     +++C
Sbjct: 4   SWVWPLWMLICQPHS-RMKEMPNIEC 28


>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 111 CKLY*TCVSQNTGTCPESSCACPETSC 191
           C L   C SQ   TC + +C C  TSC
Sbjct: 183 CPLATPCASQFGITCRKLTCFCSRTSC 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,970,251
Number of Sequences: 59808
Number of extensions: 130851
Number of successful extensions: 455
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)