Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021920
         (781 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.68 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    24   1.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.6  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   8.4  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   8.4  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -1

Query: 274 VHLLFVVCENASSCLRFVALLPEFILKFSVINPEHWQ-LFSQFSLLSPHIL 125
           +HLLF++C     C   + L   +  +  +I P H+   FS + L S   L
Sbjct: 277 MHLLFLLCIYYFYCALIILLCIYYFCRAFIIFPTHFYCAFSLYPLKSTFYL 327


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = +2

Query: 293 DQSPGPSKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTM-TN---SPKSQ 460
           DQ   PS R   +  +N   S+P    PT P   +LK+   +  P   + TN   S K Q
Sbjct: 415 DQRSTPSPRVYGNVNENQDCSTPTENSPTKPYY-KLKTANNKRPPSTELGTNIYTSSKRQ 473

Query: 461 RLT--LTPKTS 487
           R +  L+P +S
Sbjct: 474 RTSPQLSPMSS 484


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 558 FVFWYIAMRFELCNLLCSNRIINCITSHLGQYYW 659
           F+  +I  + +LC     N +IN    HL  +YW
Sbjct: 601 FLLKHIVPKLQLC---MQNLVINPHQQHLDAWYW 631


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 552 NEFVFWYIAMRFELCNLLCSNRIINCITSHLGQYYWT 662
           NE     + M F+  +L C N  +  +T+   +  WT
Sbjct: 59  NEIHIKIVLMFFKEASLYCFNYYVIVVTTFYKRRTWT 95


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -2

Query: 300 LWSKLSEWGYIFFL 259
           LW K+  W Y+  L
Sbjct: 38  LWQKIQAWTYLILL 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,680
Number of Sequences: 336
Number of extensions: 4035
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)