Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021920
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 29 0.99
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy... 27 3.0
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 27 4.0
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 27 4.0
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.3
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 26 5.3
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.3
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 26 5.3
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 26 7.0
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 9.2
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 25 9.2
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 28.7 bits (61), Expect = 0.99
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -2
Query: 504 FTSVSCEVFGVRVNLWDFGEFVMVFRGEFLVSGDFNLSIRGEVGL 370
F + S E++GV ++ W F E + RG + S D +S +G GL
Sbjct: 331 FKNESGEIYGVLLHRWCFLEIFIKLRGAY-PSNDSGISGKGIFGL 374
>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 455 ILVSLSWFLEVSFWSLVTLIFLSE 384
+L+ W L V FW++V IF+ E
Sbjct: 69 LLIGAVWGLNVGFWTVVCGIFIGE 92
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -1
Query: 232 LRFVALLPEFILKFSV 185
L++ ALLPE++ KFS+
Sbjct: 236 LKYAALLPEYVAKFSI 251
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 367 LQTYFTSDRKIKVTRDQKLTSKNHDKLTKIPEINSHSENFTRNTCKLI 510
LQ YFT+ + ++Q SKN D KI + H F +T KLI
Sbjct: 371 LQRYFTALEMQQDQKEQHKKSKNKDPFRKITHPSLHLGKF--STPKLI 416
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 359 PINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQET 496
P + KP++ + + E RN+ + NSP S + + K++ T
Sbjct: 129 PTDNKPSASTSTAVPTTEARNTSITEPANSPSSSSSSASTKSTATT 174
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 320 RILSDIQNSILSSPINYKPTSPLIERLKSPETR 418
++LS+I I + Y P + +LKSPET+
Sbjct: 276 KVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETK 308
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 337 TKLYTQLTN*LQTYFTSDRKIKVTRDQKLTSKNHDKLTKI 456
TK YT + + L T+ D + T +KLTSK +L K+
Sbjct: 210 TKNYTHIFDSLLTFTRHDSEDVSTSVEKLTSKKISELEKL 249
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 5.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 451 KIPEINSHSENFTRNTCKLIW 513
K+ + N+T NTC L+W
Sbjct: 475 KLVDTEGRELNYTENTCNLVW 495
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 120 CAKMWGESSENCENNCQCSGLIT--ENFRINSGNNATKRKQEEAFSHT 257
CA+ +++ C +NC+C G +T N + N ++E SHT
Sbjct: 321 CAQ--ADAACQCGDNCECLGCLTHPNNATTLAALNHISALEKETISHT 366
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 9.2
Identities = 19/82 (23%), Positives = 37/82 (45%)
Frame = +2
Query: 254 HYKKKMYPHSLSFDQSPGPSKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLK 433
HY+ K Y + Q K + +S + I S+P KP + +++ K+ ++ L
Sbjct: 429 HYELKTYDRAERLRQ-----KIQEVSSNKRLIPSTPPTKKPINAVLDAAKNSAAKDLHLA 483
Query: 434 TMTNSPKSQRLTLTPKTSQETL 499
M + K+ +L+P S +
Sbjct: 484 KMKLNNKNDESSLSPAKSHAVI 505
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 533 PISIATYQISLQVFLVKFSE*ELISG 456
PI ++ +SLQ L+KFS EL+ G
Sbjct: 258 PIDDVSHVVSLQECLLKFSAPELLQG 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,780
Number of Sequences: 5004
Number of extensions: 66405
Number of successful extensions: 204
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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