Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021920
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    31   0.70 
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    31   0.70 
Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    30   1.6  
AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical ...    29   2.8  
AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z81077-10|CAB03064.1|  151|Caenorhabditis elegans Hypothetical p...    29   4.9  
Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonin...    29   4.9  
AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical ...    29   4.9  
U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor...    28   8.6  

>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 296 QSPGPSKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQR 463
           +SP P +RR  S+       SP   +P SP   R +S +    P  + + SP+  R
Sbjct: 156 RSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSRSKSPRRSR 211


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 296 QSPGPSKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQR 463
           +SP P +RR  S+       SP   +P SP   R +S +    P  + + SP+  R
Sbjct: 156 RSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSRSKSPRRSR 211


>Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 117 RCAKMWGESSENCENNCQCSGLITE-NFRINSGNNATKRKQEEAFSHTTK 263
           +CAK+WG + +N + NC      TE  F  N G NA  ++ ++  +   K
Sbjct: 489 QCAKLWGPTGKNGDENCYRKN--TEGTFHGNCGTNAHTKEIKKCETENAK 536


>Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 117 RCAKMWGESSENCENNCQCSGLITE-NFRINSGNNATKRKQEEAFSHTTK 263
           +CAK+WG + +N + NC      TE  F  N G NA  ++ ++  +   K
Sbjct: 489 QCAKLWGPTGKNGDENCYRKN--TEGTFHGNCGTNAHTKEIKKCETENAK 536


>U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical
           protein C46G7.3 protein.
          Length = 715

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 332 DIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTP 478
           +++  +  SPI Y  +S    RL    T  + L+  TNSP++  +T  P
Sbjct: 280 NLREELNLSPIRYPASSTPHNRLTFAPTNTNRLQDTTNSPRTNDVTFVP 328


>Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical
           protein F11E6.7 protein.
          Length = 1011

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 293 DQSPGPSKRRILSDIQN-SILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLT 469
           D SP P+   I  ++   S +S+  + + T P +   K+PE   SP   ++++  S   T
Sbjct: 775 DNSP-PANEVIAQELPKASPISNTPSVESTQPALNVQKTPEASQSPASPISSNTGSSTFT 833

Query: 470 LTPKTSQETL 499
           + P   Q+ L
Sbjct: 834 VDPTPVQKDL 843


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 299 SPGPSKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKS-QRLTLT 475
           SP PS  +  S   ++  S+     PT+ L+    +P T+  P  + ++SP S    T+T
Sbjct: 364 SPIPSTTQTSSSAPSTYTSN-FTPSPTTTLLTSTIAPSTQGVPTSSKSSSPNSTPTTTIT 422

Query: 476 PKTSQETL 499
           P     TL
Sbjct: 423 PGAPSSTL 430


>AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical
           protein C26G2.2 protein.
          Length = 952

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 376 YFTSDRKIKVTRDQKLTSKNHDKLTKIPEINSHSENFTRN 495
           + T+D  + VT ++ LT+   ++ T +PE+ S +E  T N
Sbjct: 557 FTTTDNIVSVTTNEILTTTIEEQTTTLPEVYSTTETPTEN 596


>AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical
           protein Y48G1A.3 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +2

Query: 650 ILLDVI*DMLRIRVNGDHLSSEEY 721
           I +DVI D+LR +VNG +  +EEY
Sbjct: 131 ITIDVIEDLLRPKVNGKYEGAEEY 154


>Z81077-10|CAB03064.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.10 protein.
          Length = 151

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +3

Query: 198 RINSGNNATKRKQEEAFSHTTKRRCTPTRLASTKVLAPRSAGSSQTYKTLYSAHQ 362
           R  S     KR  ++A +    R  +P ++  T+ +  +S GSS+T + + +AH+
Sbjct: 99  RSRSSTRGKKRAPKKAVTTKAARSISPVKVKKTEAI--KSRGSSKTARRVSAAHK 151


>Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 856

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
 Frame = +2

Query: 302 PGPSKRRILSDIQNSILSSPINYKPTS--PLIERLKSPETRN-SPLKTMTNSPKSQRLTL 472
           P PSKR IL   ++ +L++     P S  P+ +R  S +  + +P++ +  SP+ QR  +
Sbjct: 281 PSPSKR-ILESARSPLLANRRIITPQSSLPVPKRAGSTKLDSPTPVRRIGESPRVQRRVI 339

Query: 473 TP 478
           TP
Sbjct: 340 TP 341


>AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical
           protein Y60A3A.1 protein.
          Length = 856

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
 Frame = +2

Query: 302 PGPSKRRILSDIQNSILSSPINYKPTS--PLIERLKSPETRN-SPLKTMTNSPKSQRLTL 472
           P PSKR IL   ++ +L++     P S  P+ +R  S +  + +P++ +  SP+ QR  +
Sbjct: 281 PSPSKR-ILESARSPLLANRRIITPQSSLPVPKRAGSTKLDSPTPVRRIGESPRVQRRVI 339

Query: 473 TP 478
           TP
Sbjct: 340 TP 341


>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 416 RNSPLKTMTNSPKSQRLTLTPKTS 487
           + +PL+T ++S  SQRLT T K+S
Sbjct: 509 KTTPLETSSSSSTSQRLTTTTKSS 532


>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
           abnormality protein1, isoform h protein.
          Length = 2006

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 290 FDQSPGPSKRRILSDIQNSILSSPINYKPTS-PLIERLKSPETRNSPLKTMTNSPKSQRL 466
           FD+    ++ R L  + ++  ++P    PTS P   R++SP T  S +   T +  S   
Sbjct: 766 FDRLKYMAEFRKLLALPDNFSTTPKQSSPTSSPTTTRMRSPSTHKSTVSQATKTASSTPQ 825

Query: 467 TLTPKTSQETLV 502
           + +  TS +  V
Sbjct: 826 SPSTTTSFDDFV 837


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,400,367
Number of Sequences: 27780
Number of extensions: 371687
Number of successful extensions: 1217
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)