Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021920
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32790.1 68417.m04665 exostosin family protein contains Pfam ...    30   2.0  
At4g11670.1 68417.m01865 expressed protein contains Pfam PF05664...    29   2.6  
At4g09060.1 68417.m01493 expressed protein                             29   3.5  
At5g47070.1 68418.m05800 protein kinase, putative similar to pro...    29   4.6  
At1g74160.1 68414.m08589 expressed protein                             29   4.6  
At5g44970.1 68418.m05515 hypothetical protein contains a novel d...    28   6.0  
At5g24220.1 68418.m02850 lipase class 3-related                        28   6.0  
At4g19510.2 68417.m02870 disease resistance protein (TIR-NBS-LRR...    28   6.0  
At4g19510.1 68417.m02869 disease resistance protein (TIR-NBS-LRR...    28   6.0  
At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P...    28   8.0  

>At4g32790.1 68417.m04665 exostosin family protein contains Pfam
           domain, PF03016: Exostosin family
          Length = 593

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 307 PLEAQDPLRHTKLYTQLTN*LQTYFTSDRKIKV 405
           PL   DPL HT LY  L+   ++Y   ++K+KV
Sbjct: 237 PLIENDPLLHTPLYWNLSMFKRSYELMEKKLKV 269


>At4g11670.1 68417.m01865 expressed protein contains Pfam PF05664:
           Protein of unknown function (DUF810)
          Length = 985

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 355 LTN*LQTYFTSDRKIKVTRDQKLTSKNHDKLTKIPEI-NSHSENFTR-NTC 501
           LTN ++ Y T  RKI+ +    L+ K  DK    P+I N+HSE  ++ +TC
Sbjct: 189 LTNSVEAYPTHRRKIEKSSRLMLSLKRKDKPHLQPQISNTHSEISSKMDTC 239


>At4g09060.1 68417.m01493 expressed protein 
          Length = 341

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 317 RRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMT--NSPKSQRLTLTP 478
           R++L   Q+ + S+  N    S    + KSP+T +SP++     +SP+  R  L+P
Sbjct: 273 RKLLRQQQSPLCSADKNRNSASAKSNKRKSPKTMSSPVEKRLEFSSPEISRKPLSP 328


>At5g47070.1 68418.m05800 protein kinase, putative similar to
           protein kinase [Lophopyrum elongatum]
           gi|13022177|gb|AAK11674
          Length = 410

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 213 NNATKRKQEEAFSHTTKRRCTPTRLASTKVLAPRSAGSSQTYKTLYSAHQ 362
           NN  KRK +E   ++       +  +S  +  PRS  S ++ K LY+  +
Sbjct: 19  NNKNKRKGKELLQNSAPELTNRSETSSFNLQTPRSLPSPRSIKDLYTERE 68


>At1g74160.1 68414.m08589 expressed protein
          Length = 1030

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 311 SKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQR 463
           S+ R+ S   N +  SPI     + L+E+   P +   P+ ++T   K +R
Sbjct: 472 SRTRVQSSSSNQVYQSPIVIMKPAKLVEKAGIPASSLIPIHSLTGIKKIRR 522


>At5g44970.1 68418.m05515 hypothetical protein contains a novel
           domain with similarity to F-box domain;
          Length = 389

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 380 SPLIERLKSPETRNSPLKTMTNSP 451
           SP++++LK P   +SP+ TMTN P
Sbjct: 344 SPILKKLK-PSFTDSPMSTMTNLP 366


>At5g24220.1 68418.m02850 lipase class 3-related
          Length = 376

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 26  FIPFILVDN*TILDCYDNGLVILVF*IRIKTLCQN 130
           F  F LV+  T++D YD+ +   VF  ++  LCQN
Sbjct: 79  FFNFSLVE--TLIDDYDSSIYGAVFEYKLSNLCQN 111


>At4g19510.2 68417.m02870 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1049

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 376 YFTSDRKIKVTRDQKLTSKNHDKLTKIPEIN 468
           Y    R + +TRD+KL  KN D    +P +N
Sbjct: 317 YRQGSRIVIITRDKKLLQKNADATYVVPRLN 347


>At4g19510.1 68417.m02869 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1049

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 376 YFTSDRKIKVTRDQKLTSKNHDKLTKIPEIN 468
           Y    R + +TRD+KL  KN D    +P +N
Sbjct: 317 YRQGSRIVIITRDKKLLQKNADATYVVPRLN 347


>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 681

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 385 SDRKIKVTRDQKLTSKNHDKLTKIPEINSHSENFTR 492
           S RK K+ R+ +L S+  DKL  + +    +  +TR
Sbjct: 37  SPRKTKLQREVELKSRGGDKLQPVSDAGGEATTYTR 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,243,930
Number of Sequences: 28952
Number of extensions: 339870
Number of successful extensions: 955
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)