Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021917X
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 5.4
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 25 5.4
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 5.4
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ... 25 7.1
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 24 9.4
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 24 9.4
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 24 9.4
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr... 24 9.4
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 24 9.4
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 24 9.4
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 113 SNLPSNDTDPILCINMACNGGSSRTSRQFCSN 18
SNLPSN + P+ ++ S +T+ SN
Sbjct: 198 SNLPSNKSSPVKHVSPNVKNNSKKTASSVNSN 229
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 5.4
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = -3
Query: 448 TQISPLSGLSPVTWRSMLSMLCSVRSSSCAYGSVWA-RPMVTARCREQELKAAASLPEQD 272
++++P S S VT+ + + R S C R RCR+ L + + + D
Sbjct: 318 SEVNPNS-TSSVTFSDFAAAISRSRCSRCKKSKKGCDRQRPCGRCRDAGLNSEDCISDDD 376
Query: 271 TPIALIGIRRNRSAG 227
P++ R R G
Sbjct: 377 MPVSNARKPRGRGRG 391
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 213 FED*GPADRLRRIPIKAMGVSCSGR 287
F + GP+ RL +P++ +SCSGR
Sbjct: 334 FPECGPSYRL--LPVEERNISCSGR 356
>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 315
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 106 KFETDPGWVKNLATINRINDVSVTRRDPAKTSFH 207
KF T P ++ L + RIND ++ P S++
Sbjct: 156 KFNTSPQRIEALIKLRRINDEFEEKKKPILHSYN 189
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 24.2 bits (50), Expect = 9.4
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 385 CSVRSSSCAYGSVWARPMVTARCREQELKAAASLPEQDTPIALIGIRRN 239
CS+R+SS + GS+ + + L + LPE D + L+ R +
Sbjct: 958 CSIRASSVSLGSIAKTIPSVLTAQTRILLSYMLLPECDIDVQLLKKRNS 1006
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 231 ADRLRRIPIKAMGVSCSGRLAAAFNS-CSLHLA 326
AD L ++ G C+G +AAA+N C + +A
Sbjct: 189 ADPLPKLSDDQHGTRCAGEVAAAWNDVCGVGIA 221
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -2
Query: 92 TDPILCINMACNGGSSRTSRQFCS 21
T P+L + + C G RT CS
Sbjct: 119 TQPLLTLVVHCKAGKGRTGTVICS 142
>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 119 SVSNLPSNDTDPILCINMACNGGSSRTSRQFCSN 18
SV N P D+ + C+N N +T+ F N
Sbjct: 225 SVGNFPVGDSIVVCCLNTMGNLNICKTTEIFSKN 258
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 24.2 bits (50), Expect = 9.4
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +1
Query: 67 MFMHKIGSVSFDGKFETDPGWVKNLATINRINDVSVTRRDPAKT 198
M HKI DG FE WV IN ++V D +T
Sbjct: 1290 MMEHKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATRT 1333
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 219 PQSDVEASLGRITPGHADIVYPVYCS 142
P ++ +G I AD+++PV CS
Sbjct: 178 PNESLQQFIGLIQQFDADVLFPVSCS 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,939
Number of Sequences: 5004
Number of extensions: 30821
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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