Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021917X
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0523 - 3792864-3792962,3793509-3793610,3793861-3793974,379... 31 0.43
02_05_0686 - 30900748-30902167,30903442-30904742 29 1.7
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 29 2.3
11_08_0015 - 27649376-27649480,27650043-27650213 28 3.0
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132... 28 3.0
08_02_0181 + 13923658-13923661,13925518-13925681,13925879-139259... 28 4.0
09_06_0357 + 22502660-22502876,22503433-22504577 27 5.3
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 27 5.3
07_03_0633 + 20120560-20123464,20123608-20123672 27 5.3
04_04_0090 - 22747049-22747282,22747438-22747847,22748562-227487... 27 5.3
04_04_0078 + 22573413-22573554,22573637-22573959,22574681-225753... 27 5.3
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 27 5.3
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676 27 7.0
08_01_0437 + 3850137-3850581,3851134-3851159 27 7.0
03_06_0743 - 35906119-35906247,35906747-35906869,35907841-359079... 27 7.0
07_03_0191 - 14920321-14920511,14920844-14921177 27 9.2
06_03_0588 + 22567820-22570802,22570917-22571269 27 9.2
05_03_0170 - 9132207-9133010,9133232-9133894 27 9.2
04_01_0081 - 890347-890603,890871-891204 27 9.2
01_01_1067 + 8403584-8404195,8404532-8404693,8404837-8405346,840... 27 9.2
>02_01_0523 -
3792864-3792962,3793509-3793610,3793861-3793974,
3794060-3794158,3794725-3794779,3795266-3795433,
3795668-3795735,3796133-3796195,3796425-3796703
Length = 348
Score = 31.1 bits (67), Expect = 0.43
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +1
Query: 109 FETDPGWVKNLATINRINDVS--VTRRDPAKTSF-HVTLRIKDLQIGYDEYRLKRW 267
+E D WV N+ D+S V R A HV L I + Y EYRLK W
Sbjct: 223 YEHDDAWVTNINLFKEYTDISRGVRRLGSAAADMSHVALGITE---AYWEYRLKPW 275
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 314 PAPRRHHRPGPNGTVRATRRPNATEHGQHGSPRDRAESAERADL 445
PA RR +P P RA RR +A E PR R ++ L
Sbjct: 172 PASRRPPQPPPPRPYRAERRQDAHESSAPSPPRSRKNRIDQEPL 215
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 268 ACPAPADSRPPSTLAPCTSPS 330
A PAP+ + PPS+ AP SPS
Sbjct: 3 ADPAPSSTPPPSSPAPAASPS 23
>11_08_0015 - 27649376-27649480,27650043-27650213
Length = 91
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 344 GQAYGDGEVQGARVEGGRESAGAGHAHR 261
G +G GEV ARV GG G G R
Sbjct: 22 GGGHGGGEVVAARVSGGGGGNGGGEGER 49
>03_01_0164 -
1326002-1326409,1326410-1326428,1326523-1326647,
1327482-1327530,1328834-1328855,1328969-1329071
Length = 241
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 16 TLLQNCREVLELPPLHAMFMHKIGSVSFDGKFETDPGWVKNLATINRIN 162
TLL C +L +H HKI DGKF P V + ++RI+
Sbjct: 119 TLLNLCVSILSTE-MHVQTQHKIEMDKRDGKFGPQPMAVPPMQQMSRID 166
>08_02_0181 +
13923658-13923661,13925518-13925681,13925879-13925978,
13926072-13926244,13926486-13927016
Length = 323
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 344 GQAYGDGEVQGARVEGGRESAGAGHAHRFNRYS 246
G +G G + GAR GG S+GAG + R++ Y+
Sbjct: 292 GVGFGTGGLYGAR--GGYGSSGAGASGRYHPYA 322
>09_06_0357 + 22502660-22502876,22503433-22504577
Length = 453
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 328 TARCREQELKAAASLPEQDTPIALIGIRRNRSAG 227
T RC E L+ AASL Q L+ + RN++AG
Sbjct: 111 TKRCAEH-LRWAASLASQHNATLLLTVDRNQAAG 143
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 314 PAPRRHHRPGPN 349
P PRRHHRP P+
Sbjct: 35 PNPRRHHRPSPS 46
>07_03_0633 + 20120560-20123464,20123608-20123672
Length = 989
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 1 INMRRTLLQNCREVLELPPL 60
IN+RR L C+++L LPPL
Sbjct: 761 INLRRIHLIECKQLLTLPPL 780
>04_04_0090 -
22747049-22747282,22747438-22747847,22748562-22748757,
22749511-22749583,22749673-22749753,22749855-22749940,
22750050-22750126,22750313-22750409,22751025-22752020,
22752882-22752926
Length = 764
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 427 GLSPVTWRSMLSMLCSVRSSSCAYGSVWARPM 332
GL+ V +S L+MLC R + AY + W M
Sbjct: 621 GLTFVQTQSFLAMLCRFRYGTFAYYAAWVAVM 652
>04_04_0078 +
22573413-22573554,22573637-22573959,22574681-22575313,
22575383-22575838
Length = 517
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 427 GLSPVTWRSMLSMLCSVRSSSCAYGSVWARPM 332
GL+ V +S L+MLC R + AY + W M
Sbjct: 438 GLTFVQTQSFLAMLCRFRYGTFAYYAAWVAVM 469
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 216 QSDVEASLGRITPGHADIVYPVYCS*ILHPTRV 118
+S V+ + G P HAD+V+ CS LHP R+
Sbjct: 459 RSRVDIAAG--VPRHADVVHCPSCSSYLHPPRL 489
>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
Length = 1098
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 88 SVSFDGKFETDPGWVKNLATINRIN-DVSVTRRD 186
++ G + PGW+K L T++++ ++V R D
Sbjct: 920 ALELSGMLKKPPGWIKTLRTLSKLTLSLTVLRTD 953
>08_01_0437 + 3850137-3850581,3851134-3851159
Length = 156
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 326 RHHRPGPNGTVRATRRPNATEHGQHGSPRDRAE 424
R R G + +T P AT HGSP+DR E
Sbjct: 83 RRRRWGATAGIASTTAP-ATSSMTHGSPKDRLE 114
>03_06_0743 -
35906119-35906247,35906747-35906869,35907841-35907954,
35908092-35908148
Length = 140
Score = 27.1 bits (57), Expect = 7.0
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 228 PADRLRRIPIKAMGVSCSGRLAAAFNSCSL---HLAVTIGLAQTEPYAQLDDLTLQSMDN 398
P+ RLR +P + +SCS + C + LAV G A + DL S+D
Sbjct: 40 PSIRLRPVPSRFQALSCSAKQDTIDKVCEIVKNQLAVDEGTA-VSGETKFVDLGADSLDT 98
Query: 399 MDLHVTGL 422
+++ V GL
Sbjct: 99 VEI-VMGL 105
>07_03_0191 - 14920321-14920511,14920844-14921177
Length = 174
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 265 WACPAPADSRPPSTLAPCTSPSP 333
W CP PA R +T+A + SP
Sbjct: 54 WRCPLPASGRHATTVAALAALSP 76
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Frame = -2
Query: 158 ILFIVARFFTQPGSVSNLPSNDTDPILCINMACNGGS------SRTSRQFCS 21
+L+I+ F P +SN ND +LC G + S S +FCS
Sbjct: 14 LLYILKFFCFLPLVISNETENDRQALLCFKSQITGSAEVLASWSNASMEFCS 65
>05_03_0170 - 9132207-9133010,9133232-9133894
Length = 488
Score = 26.6 bits (56), Expect = 9.2
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 317 APRRHHRPGPNGTVRATRRPNATEHGQH--GSPRDRAE 424
APRR R G GTV++ R EHG+ G+ RAE
Sbjct: 29 APRRRGRRGGGGTVKSWVRAR-MEHGRRRDGAAPSRAE 65
>04_01_0081 - 890347-890603,890871-891204
Length = 196
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 265 WACPAPADSRPPSTLAPCTSPSP 333
W CP PA R +T+A + SP
Sbjct: 54 WRCPLPASGRHATTVAALAALSP 76
>01_01_1067 +
8403584-8404195,8404532-8404693,8404837-8405346,
8405434-8405493,8405721-8406137,8406576-8407100
Length = 761
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 344 GQAYGDGEVQGARVEGGRESAGAGHAH 264
G G G + A VEGGRE+A AH
Sbjct: 710 GALAGAGVLLDAAVEGGRETARQARAH 736
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,751,720
Number of Sequences: 37544
Number of extensions: 259124
Number of successful extensions: 1201
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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