Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021917X
(450 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006) 30 0.77
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.77
SB_51336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19) 27 5.4
SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44) 27 5.4
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5) 27 5.4
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 27 7.2
SB_43492| Best HMM Match : Extensin_2 (HMM E-Value=0.34) 27 9.5
SB_21894| Best HMM Match : PWP2 (HMM E-Value=1) 27 9.5
SB_56947| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14) 27 9.5
>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
Length = 1382
Score = 30.3 bits (65), Expect = 0.77
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 323 RRHHRPGPNGTVRATRRPNATEHGQHGSPRDRAESAER 436
+RHH N T P +++H + G PR+R +S+ +
Sbjct: 661 QRHHSSTSNATSPIVPSPASSDHPKPGRPRNRRQSSRK 698
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 30.3 bits (65), Expect = 0.77
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 52 PPLHAMFMHKIGSVSFDGKFETDPGWVKNLATINRINDVSVT-RRDPAKT 198
PP +F+H++G V+ G+ T V N TI +N S T RD K+
Sbjct: 553 PPKAKLFVHRVGRVARAGRSGTAYSLVANDETIFEVNPTSKTSARDVMKS 602
>SB_51336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 16 TLLQNCREVLELPPLHAMFMHKIGSVSFDGKFETDPG 126
TL++ C+E +P A +GSVSF FET+ G
Sbjct: 140 TLIKECKEEASVPEHIARHAVPVGSVSF--TFETEKG 174
>SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 529
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/87 (20%), Positives = 36/87 (41%)
Frame = +1
Query: 61 HAMFMHKIGSVSFDGKFETDPGWVKNLATINRINDVSVTRRDPAKTSFHVTLRIKDLQIG 240
H + ++ + ++ K++ N+AT +ND V + P + + L + +
Sbjct: 154 HCLQLNSVNALDIINKYDVIVDATDNVATRYLLNDACVLAKKPLVSGSALRLEGQLVVYN 213
Query: 241 YDEYRLKRWACPAPADSRPPSTLAPCT 321
+D R P P PP T+ C+
Sbjct: 214 HDNGPCYRCLFPTPP---PPETVGNCS 237
>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1883
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -2
Query: 140 RFFTQPGSVSNLPSNDTDPILCINMACNGGSSRTSRQFCS 21
RF T+PGS N P+ + D I ++ + + +TS++F +
Sbjct: 1570 RFATKPGSSINAPTGNKDRIKAVSSSVT--APKTSKRFAT 1607
>SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44)
Length = 667
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 274 PAPADSRPPSTLAPCTSPSP 333
P P + PP+TL P T P P
Sbjct: 436 PTPPPTPPPTTLPPTTQPPP 455
>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
Length = 754
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -2
Query: 140 RFFTQPGSVSNLPSNDTDPILCINMACNGGSSRTSRQFCS 21
RF T+PGS N P+ + D I ++ + + +TS++F +
Sbjct: 441 RFATKPGSSINAPTGNKDRIKAVSSSVT--APKTSKRFAT 478
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 127 WVKNLATINRINDVSVTRR 183
W++NLAT+N++ D V R+
Sbjct: 1198 WIRNLATLNQLLDYEVQRQ 1216
>SB_43492| Best HMM Match : Extensin_2 (HMM E-Value=0.34)
Length = 272
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +1
Query: 184 DPAKTSFHVTLRIKDLQIGYDEYRLKRWACPAPADSRPPSTLAPCTSPSP 333
D A+ +H R + G + ++ W P S +AP T+P P
Sbjct: 209 DRARARYHGGKRQSQIPRGQRKSQIPPWTAQKPYPPVDKSKIAPWTAPEP 258
>SB_21894| Best HMM Match : PWP2 (HMM E-Value=1)
Length = 249
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 329 HHRPGPNGTVRATRRPNATEHGQHGSPR 412
+H P P + A+ +P ++H +HG P+
Sbjct: 51 NHNPEPFLYLAASLKPPPSQHAKHGKPK 78
>SB_56947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 127 WVKNLATINRINDVSVTRR 183
W++NLAT+N + D V R+
Sbjct: 164 WIRNLATLNHLLDYEVQRQ 182
>SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14)
Length = 338
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 19 LLQNCREVLELPPL--HAMFMHKIGSVS 96
L +CR +L LPPL HA F H + +++
Sbjct: 34 LHDHCRNLLVLPPLVDHAFFNHTLQNIT 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,101,337
Number of Sequences: 59808
Number of extensions: 265340
Number of successful extensions: 905
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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