Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021917X
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   4.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   4.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   4.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   6.2  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 365 TRRPNATEHGQHGSPRDR 418
           TRR   + +G++GSP ++
Sbjct: 4   TRRVKRSHNGKNGSPEEK 21


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
          protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 83 ILCINMACNGGSSRTSRQ 30
          ++C+ +AC G +S T R+
Sbjct: 8  VVCLGIACQGITSVTVRE 25


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 207 VEASLGRITPGHADIVYPVY 148
           V+   GR  PGHA +  P Y
Sbjct: 206 VQNGYGRHLPGHAQMGRPSY 225


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 25  QNCREVLELPPLHAMFMHK 81
           QN + +L+L P H    HK
Sbjct: 110 QNLKVILDLVPNHTSDQHK 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,750
Number of Sequences: 438
Number of extensions: 2229
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)