Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021916X
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...   130   4e-32
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...   103   5e-24
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    29   0.19 
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    26   1.7  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   3.0  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    25   4.0  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    24   7.0  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    23   9.2  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    23   9.2  
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    23   9.2  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    23   9.2  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score =  130 bits (315), Expect = 4e-32
 Identities = 59/83 (71%), Positives = 69/83 (83%)
 Frame = +3

Query: 6   RLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKE 185
           +LRPDRVA QDATAQMA+LQF+S+G+P VAVP T+HCDHLIEA  GG  DL RA   NKE
Sbjct: 86  KLRPDRVACQDATAQMAILQFMSAGMPEVAVPVTVHCDHLIEAYEGGPIDLERANVTNKE 145

Query: 186 VYKFLETAGAKYGVGFWKPGSGM 254
           VY FL+TA AKY +GFW+PGSG+
Sbjct: 146 VYDFLQTACAKYNIGFWRPGSGI 168



 Score = 42.3 bits (95), Expect = 2e-05
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = +2

Query: 254 VHQIILENYAFPGLPRIGXVSHTPN 328
           +HQI+LENYAFPG   IG  SHTPN
Sbjct: 169 IHQIVLENYAFPGGLLIGTDSHTPN 193


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score =  103 bits (248), Expect = 5e-24
 Identities = 44/83 (53%), Positives = 61/83 (73%)
 Frame = +3

Query: 6   RLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKE 185
           +L PDRVAMQDA+AQMA+LQF++ GL +  +P++IHCDHLI    G   D+  +   NKE
Sbjct: 90  KLNPDRVAMQDASAQMALLQFMTCGLEKTMIPASIHCDHLIVGHRGANSDIPDSIANNKE 149

Query: 186 VYKFLETAGAKYGVGFWKPGSGM 254
           ++ FL++A  KYG+ FW PGSG+
Sbjct: 150 IFDFLQSAAKKYGIQFWGPGSGI 172



 Score = 39.1 bits (87), Expect = 2e-04
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +2

Query: 254 VHQIILENYAFPGLPRIGXVSHTPN 328
           +HQI+LENYA PG   +G  SHTPN
Sbjct: 173 IHQIVLENYAAPGGMMLGTDSHTPN 197


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 29.1 bits (62), Expect = 0.19
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 236 PETDSIFSSGSL*KLVYFFVEVLSPGQILLASDLGFDQV---ITMNGG 102
           P+T+ + ++G+       F   L+PG  ++  +  FDQ    ITMNGG
Sbjct: 93  PDTEIVVTAGANEGFFSVFAAFLNPGDEVIVMEPFFDQYISNITMNGG 140


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 108 IHCDHLIEAQVGGEKDLARAKDLNKEVYKFLE 203
           IH DH IE  +   + LA+ K +N  V  F+E
Sbjct: 124 IHTDHSIEVIITEMEALAKRKLVNDAVKHFIE 155


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 141 RLGLRSSDHNEWWTVQLHGEGRKR*IVTLPFVQWRLAWPHGRD 13
           RLG   + H   +  +L  E  K  ++T P V +R+ + +GR+
Sbjct: 391 RLGFLGTLHLSVFIDRLKDEYGKELLITSPTVPYRIKYKNGRE 433


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 14  SRPCGHARRHCTNGNVTIYLFRPSPCSCTVHH 109
           SRP   A +  T+ NV I++     C+  +H+
Sbjct: 282 SRPLNQAEKTATSTNVLIWIGDKMQCTQVIHN 313


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 205 VSKNLYTSLLRSLALAKSFSPPTW 134
           +SKN +TSL RSL L+      TW
Sbjct: 624 LSKNKHTSLARSLLLSHLDKGWTW 647


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 217 LAPAVSKN-LYTSLLRSLALAKSFSPPT 137
           +AP +SK  L   LLRSLA+ ++   PT
Sbjct: 407 IAPKLSKKTLNNELLRSLAVVQNDQHPT 434


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +3

Query: 126 IEAQVGGEKDLARAKDLNKEVYKFLETAGAKYGVGFWKPGSGMSI 260
           ++AQ+   +D+      N E++KF      +  + +  PG+G ++
Sbjct: 284 LQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTM 328


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 239 LPETDSIFSSGSL*KLVYFFVEVLSPGQILLASDLGFDQ 123
           LP+  SIF + ++  + Y F+ + S G +     L FD+
Sbjct: 158 LPQYISIFRARAVTGISYLFLAIDSSGSLFSFLSLPFDR 196


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 150 SRLRLGLRSSDHNEWWTVQLHGEGRK 73
           S++++G+RS  HN    + L+ E R+
Sbjct: 658 SQIQIGVRSEYHNSEGAIYLYYENRQ 683


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,568,681
Number of Sequences: 5004
Number of extensions: 30515
Number of successful extensions: 93
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)