Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021916X
(333 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0604 + 26056528-26056776 29 1.2
08_01_0426 - 3757110-3758405 27 4.9
03_02_0625 + 9942767-9943196,9943985-9944176,9944267-9944506,994... 27 4.9
02_02_0711 - 13180406-13180423,13180483-13180563,13181026-131811... 27 4.9
11_06_0599 + 25395606-25395705,25396465-25396544,25396901-253969... 26 6.4
03_02_0582 + 9624481-9626844 26 6.4
01_05_0218 - 19430404-19431189 26 6.4
12_02_1071 + 25824311-25824460,25824774-25824857,25825168-258252... 26 8.5
06_01_0871 - 6659682-6659937,6660650-6660711,6660824-6661018,666... 26 8.5
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296... 26 8.5
>03_05_0604 + 26056528-26056776
Length = 82
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 222 GVGFWKPGSGMSIRSFWRTMRSLVYPGSAXSPTHLME 332
G G WKPG G +R + R L G A +PT + E
Sbjct: 5 GWGDWKPGFGGGLRRDFELGRRLRMLGRAAAPTWMEE 41
>08_01_0426 - 3757110-3758405
Length = 431
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 236 EARLWYVHQIILENYAFPGLPRIGXVSHTPNG 331
+AR W HQ++L G + + H P+G
Sbjct: 172 QAREWVYHQVVLSRSPAEGSACVALLLHRPDG 203
>03_02_0625 +
9942767-9943196,9943985-9944176,9944267-9944506,
9945397-9945614,9946284-9946535,9947132-9947410
Length = 536
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +3
Query: 144 GEKDLARAKDLNKEVYKFLETAGAKYGVG-FWKPGSGMSIRSFWRTMRSL 290
GE D +DLN + L AGA V FW G W +R +
Sbjct: 233 GESDPHPGRDLNSSAHDMLHLAGALRIVDKFWVVGYSAGSIHAWSALRHI 282
>02_02_0711 -
13180406-13180423,13180483-13180563,13181026-13181188,
13182096-13182206,13182365-13182429
Length = 145
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 216 KYGVGFWKPGSGMSIRSFWR 275
KY + W G +IRS+WR
Sbjct: 59 KYSLNIWDIGGQKTIRSYWR 78
>11_06_0599 +
25395606-25395705,25396465-25396544,25396901-25396966,
25397076-25397123,25397226-25397293,25397404-25397476,
25397573-25397734,25398042-25398236,25398325-25398413,
25398487-25398676
Length = 356
Score = 26.2 bits (55), Expect = 6.4
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -1
Query: 258 WTYQSRASRNRLHI*LRQSLKTCI-LLC*GP*PWPNPSRLRLGLRSSDHNEWWTVQLHGE 82
WTY + LH + ++ T +C G P SR G +DH E++ V LH +
Sbjct: 256 WTYHHFSREVWLHETIVGNVVTRNETICDGSGEDPTCSRSVYGRSVADHLEYYGVSLHAD 315
Query: 81 GR 76
R
Sbjct: 316 SR 317
>03_02_0582 + 9624481-9626844
Length = 787
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 129 RSSDHNEWWTVQLHGEGR 76
R ++HN W ++ HGEGR
Sbjct: 406 RLAEHNAAWQLKHHGEGR 423
>01_05_0218 - 19430404-19431189
Length = 261
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 2 SPPASRPCGHA-RRHCTNGNVTIYLFRPSPC 91
+PPA+ PCGHA C +T +LF+ + C
Sbjct: 189 TPPANLPCGHAFHPPC----ITRWLFKGTTC 215
>12_02_1071 +
25824311-25824460,25824774-25824857,25825168-25825246,
25825334-25825428,25825940-25826067,25826160-25826393,
25826509-25826683,25826716-25826748,25827292-25827375,
25827929-25828169,25828275-25828453,25828800-25828873,
25830800-25830950,25831178-25831252,25831748-25831778,
25832107-25832339
Length = 681
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 225 VGFWKPGSGMSIRSFWRTMRSLVYPGSAXSPTHLM 329
V F+K S+R F T +SLV P SP L+
Sbjct: 46 VNFFKEHWPSSLRDFVLTAKSLVLPREQKSPRSLL 80
>06_01_0871 -
6659682-6659937,6660650-6660711,6660824-6661018,
6663112-6663336,6663495-6663653
Length = 298
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 241 GFQKPTPYLAPAVSKNLYTSL 179
G P LAPAV+ N+YT L
Sbjct: 219 GSMNPARTLAPAVASNVYTGL 239
>02_05_0975 + 33227431-33227730,33228556-33228636,33228883-33229680,
33230829-33231005,33231159-33231274,33231422-33231520,
33231598-33232040,33232147-33232184,33232343-33232600,
33233378-33233525,33233989-33234108,33234884-33234984,
33235090-33235213,33235386-33235498,33236103-33236214,
33236298-33236432,33236527-33236593,33236685-33236741,
33236774-33236900,33237221-33237338,33237418-33237929
Length = 1347
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 205 VSKNLYTSLLRSLALAKSFSPPTWASIK*SQ*MVD 101
+S N SLL LA K FS + IK S+ MVD
Sbjct: 1060 ISGNTMLSLLSKLASLKRFSELSLTGIKLSKLMVD 1094
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,635,710
Number of Sequences: 37544
Number of extensions: 254133
Number of successful extensions: 624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -