Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021916X
(333 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2) 104 2e-23
SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.23
SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.31
SB_48950| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.31
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18) 29 1.2
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18) 29 1.2
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_38421| Best HMM Match : Pox_A32 (HMM E-Value=0.022) 27 2.9
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05) 27 2.9
SB_30616| Best HMM Match : Pox_A32 (HMM E-Value=0.0095) 27 2.9
SB_59508| Best HMM Match : PhdYeFM (HMM E-Value=2.1) 27 2.9
SB_53423| Best HMM Match : Pox_A32 (HMM E-Value=0.0095) 27 2.9
SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_35024| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_29845| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0) 27 5.0
SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_31752| Best HMM Match : Bac_surface_Ag (HMM E-Value=0.0069) 26 8.8
>SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)
Length = 193
Score = 104 bits (250), Expect = 2e-23
Identities = 46/60 (76%), Positives = 52/60 (86%)
Frame = +3
Query: 75 SGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKEVYKFLETAGAKYGVGFWKPGSGM 254
S +VAVPSTIHCDHLIEA+ GG +DLA+AKD+NKEVY FL TA AKYGVGFWKPGSG+
Sbjct: 102 SSWQKVAVPSTIHCDHLIEAKDGGSQDLAKAKDINKEVYNFLATASAKYGVGFWKPGSGI 161
Score = 47.2 bits (107), Expect = 3e-06
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +2
Query: 254 VHQIILENYAFPGLPRIGXVSHTPNG 331
+HQI+LENYAFPG+ IG SHTPNG
Sbjct: 162 IHQIVLENYAFPGVMLIGTDSHTPNG 187
>SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 889
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 223 ESVSGSPALVCPSDHSGELCVPWSTQDRXSLP 318
E P +VCP H+GE +P S + SLP
Sbjct: 395 EVAVADPPVVCPQTHTGESAIPRSRRSFESLP 426
>SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 30.7 bits (66), Expect = 0.31
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 252 MSIRSFWRTMRSLVYPGSAXS 314
+ I+ FWRT R +VYPGS S
Sbjct: 160 VEIKLFWRTSRIIVYPGSRAS 180
>SB_48950| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 30.7 bits (66), Expect = 0.31
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 252 MSIRSFWRTMRSLVYPGSAXS 314
+ I+ FWRT R +VYPGS S
Sbjct: 46 VEIKLFWRTSRIIVYPGSRAS 66
>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
Length = 1284
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 92 YTGKAGRDKL*HCHLCSGVLHGHTVGTQAV 3
+ G AG+DK+ C +CS HG + + +
Sbjct: 824 FCGSAGKDKMFFCKVCSEPFHGFCLDEEPI 853
>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
Length = 458
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 92 YTGKAGRDKL*HCHLCSGVLHGHTVGTQAV 3
+ G AG+DK+ C +CS HG + + +
Sbjct: 165 FCGSAGKDKMFFCKVCSEPFHGFCLDEEPI 194
>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 6 RLRPDRVA-MQDATAQMAMLQFISSGLPRVAVPSTIHC---DHLIEAQVGGEKDLARAKD 173
R+R +R ++ AT LQ + SG RV VP ++ DHL + +GGE L RA++
Sbjct: 470 RIREERPRQLKKATETDDTLQTLKSG-ERVIVPESMRKEIKDHLHISHLGGESMLRRARE 528
>SB_38421| Best HMM Match : Pox_A32 (HMM E-Value=0.022)
Length = 1144
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 226 SVSGSPALVCPSDHSGELCVPWST 297
+V+ SP +VCP HSGE +P T
Sbjct: 760 AVADSP-VVCPQTHSGESAIPEQT 782
>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
Length = 1081
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 226 SVSGSPALVCPSDHSGELCVPWST 297
+V+ SP +VCP HSGE +P T
Sbjct: 595 AVADSP-VVCPQKHSGESAIPEQT 617
>SB_30616| Best HMM Match : Pox_A32 (HMM E-Value=0.0095)
Length = 396
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 226 SVSGSPALVCPSDHSGELCVPWST 297
+V+ SP +VCP HSGE +P T
Sbjct: 372 AVADSP-VVCPQTHSGESAIPEQT 394
>SB_59508| Best HMM Match : PhdYeFM (HMM E-Value=2.1)
Length = 204
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 226 SVSGSPALVCPSDHSGELCVPWST 297
+V+ SP +VCP HSGE +P T
Sbjct: 180 AVADSP-VVCPQKHSGESAIPEQT 202
>SB_53423| Best HMM Match : Pox_A32 (HMM E-Value=0.0095)
Length = 1148
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 226 SVSGSPALVCPSDHSGELCVPWST 297
+V+ SP +VCP HSGE +P T
Sbjct: 639 AVADSP-VVCPQTHSGESAIPEQT 661
>SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1938
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 15 PDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIE 131
PD+ Q ATA +A + + + PR A P +HC +E
Sbjct: 1563 PDKGVPQYATAVLAFRRKVRALNPRDAGPVIVHCSAGVE 1601
>SB_35024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 226 SVSGSPALVCPSDHSGELCVPWST 297
+V+ SP +VCP HSGE +P T
Sbjct: 66 AVADSP-VVCPLTHSGESAIPEQT 88
>SB_29845| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 223 ESVSGSPALVCPSDHSGELCVP 288
E P +VCP H+GE +P
Sbjct: 68 EVAVADPPMVCPQTHTGESAIP 89
>SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 979
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 15 PDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIE 131
PD+ Q ATA +A + + + PR A P +HC +E
Sbjct: 545 PDKGVPQYATAVLAFRRKVRALNPRDAGPVIVHCSVGVE 583
>SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1492
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 15 PDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHC 116
PD+ Q ATA +A + + + PR A P +HC
Sbjct: 1047 PDKGVPQYATAVLAFRRKVRALNPRDAGPVIVHC 1080
>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1916
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 226 SVSGSPALVCPSDHSGELCVPWST 297
+V SP +VCP HSGE +P T
Sbjct: 1504 AVVDSP-VVCPQTHSGESAIPEQT 1526
>SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1780
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 226 SVSGSPALVCPSDHSGELCVP 288
+V+ SP +VCP HSGE +P
Sbjct: 1760 AVADSP-VVCPQMHSGESAIP 1779
>SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 25.8 bits (54), Expect = 8.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 241 PALVCPSDHSGELCVP 288
P +VCP H+GE +P
Sbjct: 914 PPVVCPQTHTGESAIP 929
>SB_31752| Best HMM Match : Bac_surface_Ag (HMM E-Value=0.0069)
Length = 354
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 156 LARAKDLNKEVYKFLETAGAKYGVGFWKPGSGMSIRSF 269
+ R +++N +V F Y +GF KP G S++SF
Sbjct: 11 MGRGENVNADV-GFGTRTKTNYQLGFTKPFHGKSVKSF 47
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,587,240
Number of Sequences: 59808
Number of extensions: 268730
Number of successful extensions: 700
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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