Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021916X
(333 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L25599-7|AAA28050.2| 777|Caenorhabditis elegans Aconitase prote... 159 6e-40
L25599-9|AAN63393.1| 683|Caenorhabditis elegans Aconitase prote... 142 4e-35
L25599-8|AAL65788.1| 665|Caenorhabditis elegans Aconitase prote... 30 0.35
Z83224-2|CAE17796.1| 208|Caenorhabditis elegans Hypothetical pr... 29 0.81
Z81125-11|CAE17965.1| 208|Caenorhabditis elegans Hypothetical p... 29 0.81
Z81125-7|CAJ85774.1| 84|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z29094-11|CAI06056.1| 235|Caenorhabditis elegans Hypothetical p... 28 1.4
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 27 3.3
U61946-1|AAC24390.1| 575|Caenorhabditis elegans Hypothetical pr... 27 4.3
AC024785-5|AAF60596.1| 577|Caenorhabditis elegans C-type lectin... 27 4.3
Z66499-6|CAA91299.2| 765|Caenorhabditis elegans Hypothetical pr... 26 5.7
Z81586-7|CAB04693.1| 359|Caenorhabditis elegans Hypothetical pr... 26 7.5
U61948-6|AAB03142.1| 497|Caenorhabditis elegans Hypothetical pr... 25 10.0
>L25599-7|AAA28050.2| 777|Caenorhabditis elegans Aconitase protein
2, isoform a protein.
Length = 777
Score = 159 bits (385), Expect = 6e-40
Identities = 73/83 (87%), Positives = 78/83 (93%)
Frame = +3
Query: 6 RLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKE 185
RLRPDRVAMQDATAQMAMLQFISSGLP+ AVPSTIHCDHLIEAQ GG +DLARAKDLNKE
Sbjct: 87 RLRPDRVAMQDATAQMAMLQFISSGLPKTAVPSTIHCDHLIEAQKGGAQDLARAKDLNKE 146
Query: 186 VYKFLETAGAKYGVGFWKPGSGM 254
V+ FL TAG+KYGVGFWKPGSG+
Sbjct: 147 VFNFLATAGSKYGVGFWKPGSGI 169
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +2
Query: 254 VHQIILENYAFPGLPRIGXVSHTPNG 331
+HQIILENYAFPGL IG SHTPNG
Sbjct: 170 IHQIILENYAFPGLLLIGTDSHTPNG 195
>L25599-9|AAN63393.1| 683|Caenorhabditis elegans Aconitase protein
2, isoform c protein.
Length = 683
Score = 142 bits (345), Expect = 4e-35
Identities = 65/75 (86%), Positives = 70/75 (93%)
Frame = +3
Query: 30 MQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKEVYKFLETA 209
MQDATAQMAMLQFISSGLP+ AVPSTIHCDHLIEAQ GG +DLARAKDLNKEV+ FL TA
Sbjct: 1 MQDATAQMAMLQFISSGLPKTAVPSTIHCDHLIEAQKGGAQDLARAKDLNKEVFNFLATA 60
Query: 210 GAKYGVGFWKPGSGM 254
G+KYGVGFWKPGSG+
Sbjct: 61 GSKYGVGFWKPGSGI 75
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +2
Query: 254 VHQIILENYAFPGLPRIGXVSHTPNG 331
+HQIILENYAFPGL IG SHTPNG
Sbjct: 76 IHQIILENYAFPGLLLIGTDSHTPNG 101
>L25599-8|AAL65788.1| 665|Caenorhabditis elegans Aconitase protein
2, isoform b protein.
Length = 665
Score = 30.3 bits (65), Expect = 0.35
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3
Query: 6 RLRPDRVAMQDATAQMA 56
RLRPDRVAMQDA MA
Sbjct: 87 RLRPDRVAMQDAVDVMA 103
>Z83224-2|CAE17796.1| 208|Caenorhabditis elegans Hypothetical
protein F29C6.1a protein.
Length = 208
Score = 29.1 bits (62), Expect = 0.81
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = +3
Query: 15 PDRVAMQDATAQMAMLQFIS--SGLPRVAV-PSTIHCDHLIEAQVGG----EKDLARAKD 173
P M A A+ F+ +G+P + + T+H D LIE Q+ G EKD ++ +D
Sbjct: 120 PSSTYMSHAYAKNFTPVFVKDENGIPFIYIFKETVHADGLIEDQIAGMSLKEKDESKVED 179
Query: 174 LNKEV 188
N+EV
Sbjct: 180 -NEEV 183
>Z81125-11|CAE17965.1| 208|Caenorhabditis elegans Hypothetical
protein F29C6.1a protein.
Length = 208
Score = 29.1 bits (62), Expect = 0.81
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = +3
Query: 15 PDRVAMQDATAQMAMLQFIS--SGLPRVAV-PSTIHCDHLIEAQVGG----EKDLARAKD 173
P M A A+ F+ +G+P + + T+H D LIE Q+ G EKD ++ +D
Sbjct: 120 PSSTYMSHAYAKNFTPVFVKDENGIPFIYIFKETVHADGLIEDQIAGMSLKEKDESKVED 179
Query: 174 LNKEV 188
N+EV
Sbjct: 180 -NEEV 183
>Z81125-7|CAJ85774.1| 84|Caenorhabditis elegans Hypothetical
protein F29C6.1b protein.
Length = 84
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Frame = +3
Query: 75 SGLPRVAV-PSTIHCDHLIEAQVGG----EKDLARAKDLNKEV 188
+G+P + + T+H D LIE Q+ G EKD ++ +D N+EV
Sbjct: 18 NGIPFIYIFKETVHADGLIEDQIAGMSLKEKDESKVED-NEEV 59
>Z29094-11|CAI06056.1| 235|Caenorhabditis elegans Hypothetical
protein C07A9.12 protein.
Length = 235
Score = 28.3 bits (60), Expect = 1.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 231 FWKPGSGMSIRSFWRTMR 284
FW+PGS +I +F+R M+
Sbjct: 12 FWRPGSNQNILTFYRAMK 29
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical
protein W06A7.3f protein.
Length = 2488
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 90 VAVPSTIHCDHLIEAQVGGEKDLARAKDLNKEV 188
VAV +T CDH++++Q K L RA L +++
Sbjct: 453 VAVKATESCDHVVDSQ----KTLERASSLEEDI 481
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical
protein W06A7.3c protein.
Length = 2484
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 90 VAVPSTIHCDHLIEAQVGGEKDLARAKDLNKEV 188
VAV +T CDH++++Q K L RA L +++
Sbjct: 453 VAVKATESCDHVVDSQ----KTLERASSLEEDI 481
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical
protein W06A7.3a protein.
Length = 2607
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 90 VAVPSTIHCDHLIEAQVGGEKDLARAKDLNKEV 188
VAV +T CDH++++Q K L RA L +++
Sbjct: 453 VAVKATESCDHVVDSQ----KTLERASSLEEDI 481
>U61946-1|AAC24390.1| 575|Caenorhabditis elegans Hypothetical
protein F47C12.4 protein.
Length = 575
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 155 ILLASDLGFDQVITMNGGRYSYTGKAGRD 69
+LL SD GF++ +GG YT +AG D
Sbjct: 24 LLLNSDEGFEKACKQSGG--DYTQRAGND 50
>AC024785-5|AAF60596.1| 577|Caenorhabditis elegans C-type lectin
protein 73 protein.
Length = 577
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 155 ILLASDLGFDQVITMNGGRYSYTGKAGRD 69
+LL SD GF++ +GG YT +AG D
Sbjct: 24 LLLNSDEGFEKACKQSGG--DYTQRAGND 50
>Z66499-6|CAA91299.2| 765|Caenorhabditis elegans Hypothetical
protein T01B7.6 protein.
Length = 765
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 220 MESVSGSPALVCPSDHSGELCVPWSTQDR 306
M VS A +DH G + +PW++ DR
Sbjct: 263 MNKVSHGKAGWAWNDHVGRIYIPWNSTDR 291
>Z81586-7|CAB04693.1| 359|Caenorhabditis elegans Hypothetical
protein T05F1.9 protein.
Length = 359
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 213 LRQSLKTCILLC*GP*PWPNPSRLRLGLRSSDHNEWWT 100
L LK+ C P W NP L+L S +EW+T
Sbjct: 175 LANGLKSLDFRCPLPDDWSNPKILKLDKLVSWPSEWFT 212
>U61948-6|AAB03142.1| 497|Caenorhabditis elegans Hypothetical
protein C46A5.1 protein.
Length = 497
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -3
Query: 292 TRERIVLQNDLMD---IPEPGFQKPTPYLAPAVSKNLYTS 182
T+ ++V Q L D I F+K + YL P +SKN + S
Sbjct: 203 TKWKLVAQETLKDDANIAVNEFEKVSGYLPPHISKNHFVS 242
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,980,218
Number of Sequences: 27780
Number of extensions: 184008
Number of successful extensions: 503
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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