Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021916X
(333 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g11050.1 68414.m01266 protein kinase family protein contains ... 31 0.19
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea... 29 0.77
At2g15680.1 68415.m01795 calmodulin-related protein, putative si... 28 1.8
At5g51200.1 68418.m06349 expressed protein 27 3.1
At1g21970.1 68414.m02749 CCAAT-box binding transcription factor ... 27 3.1
At5g54280.1 68418.m06761 myosin heavy chain, putative similar to... 27 4.1
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 27 4.1
At2g41730.1 68415.m05158 expressed protein 27 4.1
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 26 5.5
At2g18390.1 68415.m02142 ADP-ribosylation factor-like protein 2 ... 26 5.5
At2g17540.2 68415.m02030 expressed protein 26 5.5
At2g17540.1 68415.m02029 expressed protein 26 5.5
At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing... 26 7.2
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT... 26 7.2
At2g25730.1 68415.m03084 expressed protein 26 7.2
At2g20870.1 68415.m02459 cell wall protein precursor, putative i... 26 7.2
At1g48470.1 68414.m05418 glutamine synthetase, putative similar ... 26 7.2
At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase fam... 25 9.5
At4g15840.1 68417.m02409 expressed protein 25 9.5
At3g27530.1 68416.m03441 vesicle tethering family protein contai... 25 9.5
At1g80860.2 68414.m09486 expressed protein 25 9.5
At1g80860.1 68414.m09487 expressed protein 25 9.5
At1g75710.1 68414.m08795 zinc finger (C2H2 type) family protein ... 25 9.5
>At1g11050.1 68414.m01266 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 625
Score = 31.1 bits (67), Expect = 0.19
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 229 VSGSPALVCPSDHSGELCVPWSTQD 303
V+ SP+ CP D S L +PW+T D
Sbjct: 19 VAQSPSQTCPLDFSHVLTIPWNTTD 43
>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); some
similarity to s-tomosyn isoform (GI:4689231)[Rattus
norvegicus]; contains non-consensus AT-AC splice sites at
intron 18
Length = 1606
Score = 29.1 bits (62), Expect = 0.77
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -3
Query: 250 PEPGFQKPTPYLAPAVSKNLYTSLLRSLALAKSFSPPTWASIK*SQ*MVDGTATRGRPEE 71
P+P Q P +A + ++ + + + S+ +AK+ PP K Q A +G P +
Sbjct: 1230 PQPVSQPAPPGVAAPIPEDFFQNTIPSVEVAKTLPPPGTYLSKMDQAARAAIAAQGGPNQ 1289
Query: 70 IN 65
N
Sbjct: 1290 AN 1291
>At2g15680.1 68415.m01795 calmodulin-related protein, putative
similar to calmodulin-related protein 2, touch-induced
SP:P25070 from [Arabidopsis thaliana]
Length = 187
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -1
Query: 135 GLRSSD-HNEWWTVQLHGEGR 76
G+RSSD N +WT L+G+G+
Sbjct: 116 GIRSSDIRNSFWTFDLNGDGK 136
>At5g51200.1 68418.m06349 expressed protein
Length = 1808
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 21 RVAMQDATAQMAMLQFISSGLP--RVAVPSTIHCDHLIEAQVGGEKDL 158
+V D ++Q+ +QF + + R PSTI +LI A + GEKD+
Sbjct: 596 QVGKSDQSSQVYDMQFELNEVEARREQYPSTISFLNLINALIAGEKDV 643
>At1g21970.1 68414.m02749 CCAAT-box binding transcription factor
(LEC1) similar to CAAT-box DNA binding protein subunit B
(NF-YB) (SP:P25209) (GI:22380) [Zea mays]; identical to
GB:AAC39488 GI:3282674 from [Arabidopsis thaliana] (Cell
93 (7), 1195-1205 (1998)); identified in Plant Cell 2003
Jan;15(1):5-18; contains Pfam PF00808 : Histone-like
transcription factor (CBF/NF-Y) and archaeal histone
Length = 238
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 128 DQVITMNGGRYSYTGKAGRDK 66
DQ + M GGRY G +G+D+
Sbjct: 194 DQSMVMGGGRYYQNGSSGQDE 214
>At5g54280.1 68418.m06761 myosin heavy chain, putative similar to
myosin [Arabidopsis thaliana] gi|499045|emb|CAA84065
Length = 1030
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 160 PGLRTSTKKYTSF*RLPELNMESVSGS 240
PG+RT T K+T+ PEL + ++GS
Sbjct: 914 PGVRTPTNKFTNG-NTPELRIRELNGS 939
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 72 SSGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKEVYKF 197
S G+ + V DH++ +GG + A DL+K ++F
Sbjct: 279 SGGVDDMLVGCLWQNDHIVTVSLGGTISIFSASDLDKSPFQF 320
>At2g41730.1 68415.m05158 expressed protein
Length = 119
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 131 FDQVITMNGGRYSYTGKAGRDKL*HCHLCSGVLHGH 24
F +V + + TG++ R K HCH+ + GH
Sbjct: 39 FTKVPSKTTNHSNTTGESERSKYSHCHVSPAIKSGH 74
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 26.2 bits (55), Expect = 5.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 216 KYGVGFWKPGSGMSIRSFW 272
+YG+G PGS ++S W
Sbjct: 45 QYGIGSQNPGSASDVKSLW 63
>At2g18390.1 68415.m02142 ADP-ribosylation factor-like protein 2
(ARL2) identical to ARL2 G-protein (Halimasch; HAL;
TITAN5) GI:20514265 from [Arabidopsis thaliana];
identical to cDNA ARL2 G-protein mRNA GI:20514264;
contains Pfam profile PF00025: ADP-ribosylation factor
family; contains TIGRfam profile TIGR00231: small
GTP-binding protein domain
Length = 185
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 216 KYGVGFWKPGSGMSIRSFWR 275
KY + W G +IRS+WR
Sbjct: 59 KYTLNIWDVGGQKTIRSYWR 78
>At2g17540.2 68415.m02030 expressed protein
Length = 275
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 72 SSGLPRVAVPSTIHCDHLIEAQVGGEKDLARA 167
S+G AV T H DHL+ Q ++LA+A
Sbjct: 49 SNGSSASAVVHTHHLDHLLNDQTRSPEELAQA 80
>At2g17540.1 68415.m02029 expressed protein
Length = 275
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 72 SSGLPRVAVPSTIHCDHLIEAQVGGEKDLARA 167
S+G AV T H DHL+ Q ++LA+A
Sbjct: 49 SNGSSASAVVHTHHLDHLLNDQTRSPEELAQA 80
>At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 850
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 149 LASDLGFDQVITMNGGRYSYTGKAGRDKL*HC 54
L++D+G +++ G + + T GR L HC
Sbjct: 767 LSADIGMVELLLQYGAKINATDSKGRTPLHHC 798
>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (ATHIM)
identical to SP|P34881 DNA (cytosine-5)-methyltransferase
AthI (EC 2.1.1.37) {Arabidopsis thaliana}
Length = 1534
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 262 LMDIPEPGFQKPTPYLAPAVSKNLYTSLLRSLALAKSFSPPT 137
L + PEP P L ++S+ L+ + +RS AL F P T
Sbjct: 1296 LPEWPEPMHVFGVPKLKISLSQGLHYAAVRSTALGAPFRPIT 1337
>At2g25730.1 68415.m03084 expressed protein
Length = 2464
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 1 ITACVPTVWPCKTPLHKWQCYNLSLPAFP 87
I+ACVP V+P ++ H W C + +P P
Sbjct: 1083 ISACVPPVYPPRSG-HGWACIPV-IPTTP 1109
>At2g20870.1 68415.m02459 cell wall protein precursor, putative
identical to Putative cell wall protein precursor
(Swiss-Prot:P47925) [Arabidopsis thaliana]; weak
similarity to mu-protocadherin (GI:7861967) [Rattus
norvegicus]
Length = 140
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 253 IPEPGFQKPTPYLAPAVSKN 194
+P PGF+ PTP + N
Sbjct: 112 VPNPGFEAPTPTIGAGTGSN 131
>At1g48470.1 68414.m05418 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase, GS1) [Arabidopsis thaliana]
SWISS-PROT:Q9LVI8
Length = 353
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 234 WKPGSGMSIRSFWRTMRSLVYPGSAXSPTHL 326
W GSGM IRS RT+ PG +PT L
Sbjct: 25 WIGGSGMDIRSKARTL-----PGPVSNPTKL 50
>At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase family
protein similar to iturin A synthetase C [Bacillus
subtilis] GI:16040972; contains Pfam profile PF00501:
AMP-binding enzyme
Length = 1040
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 4 TACVPTVWPCKTPLHKWQCY 63
T C VWPCK + CY
Sbjct: 87 TGCSSFVWPCKKERQRKFCY 106
>At4g15840.1 68417.m02409 expressed protein
Length = 660
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 259 MDIPEPGFQKPTPYLAPAVSKNLYTSLLRSL 167
M +P P +P+P + P + TS LRSL
Sbjct: 1 MTVPPPPSPQPSPPVLPHAESDQSTSELRSL 31
>At3g27530.1 68416.m03441 vesicle tethering family protein contains
Pfam PF04869: Uso1 / p115 like vesicle tethering
protein, head region and PF04871: Uso1 / p115 like
vesicle tethering protein, C terminal region
Length = 914
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 283 RIVLQNDL--MDIPEPGFQKPTPYLAPAVSKNLYTSLLRSLALAKSF 149
+IVL++ + M PEP FQ+ YLA A S S +S L KS+
Sbjct: 478 KIVLESPMPSMGTPEPLFQRIVRYLAVASSMK---SKEKSSTLGKSY 521
>At1g80860.2 68414.m09486 expressed protein
Length = 164
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 156 LARAKDLNKEVYKFLETAGAKYGVGFWK 239
+A + LN VY+ L AG YGV F K
Sbjct: 73 MAFGQFLNFRVYQLLGEAGTYYGVRFGK 100
>At1g80860.1 68414.m09487 expressed protein
Length = 164
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 156 LARAKDLNKEVYKFLETAGAKYGVGFWK 239
+A + LN VY+ L AG YGV F K
Sbjct: 73 MAFGQFLNFRVYQLLGEAGTYYGVRFGK 100
>At1g75710.1 68414.m08795 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 462
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 179 QRSIQVFRDCRS*IWSRFLEA 241
QR+IQ F DCR + +R L+A
Sbjct: 270 QRTIQRFEDCRDAVKARALQA 290
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,721,827
Number of Sequences: 28952
Number of extensions: 182269
Number of successful extensions: 483
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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