Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021913
         (641 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    24   0.93 
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   2.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   4.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   4.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.5  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   8.6  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   8.6  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 520 SAVFQVTPLSLDEWVTVMKVSVPVVLLDEVLKFVARKISD 639
           S  +QV P  L   V     ++ VVL  EV +FV   I D
Sbjct: 421 SYTYQVLPFGLKTAVGSFSRAMDVVLGTEVREFVVNYIDD 460


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 96  PDLDIMDKPPRKAD 137
           P++DI DKP +K D
Sbjct: 66  PEIDIEDKPAQKID 79


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 501 SSTRGSFGRVPSDAAVARRVGNRNEGLSTRGTA 599
           SSTRG+    PS         N + G S+ G++
Sbjct: 122 SSTRGNNNNTPSATNNNTNFNNNSNGASSVGSS 154


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 501 SSTRGSFGRVPSDAAVARRVGNRNEGLSTRGTA 599
           SSTRG+    PS         N + G S+ G++
Sbjct: 70  SSTRGNNNNTPSATNNNTNFNNNSNGASSVGSS 102


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 501 SSTRGSFGRVPSDAAVARRVGNRNEGLSTRGTA 599
           SSTRG+    PS         N + G S+ G++
Sbjct: 253 SSTRGNNNNTPSATNNNTNFNNNSNGASSVGSS 285



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 136 TKVSSPDGCSSDTWLSVAT*VRPQSALPPGG 228
           T+ +SP+      WL+ A+     +ALP  G
Sbjct: 24  TRSNSPEAGGGGFWLAAASGAPHPAALPIEG 54


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/46 (23%), Positives = 17/46 (36%)
 Frame = +1

Query: 112  WTSPLARLTKVSSPDGCSSDTWLSVAT*VRPQSALPPGGSCTPRTD 249
            WT+   R T  + P   S+ T  +        + +PP     P  D
Sbjct: 1052 WTTTTTRRTTTTRPTTTSTTTRPTTTNWPTQGTTIPPPAVVMPEVD 1097



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -2

Query: 562  PTRRATAASLGTRPKEPRVEDDEMKSEGERHGADE 458
            PT      ++G  P+EP +  + +  +G    AD+
Sbjct: 2212 PTTMKPTTTIGYEPQEPVLPAEVVPCQGRLFVADD 2246


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/18 (33%), Positives = 7/18 (38%)
 Frame = +3

Query: 426 WSPCRPGQTCGSSAPWRS 479
           W P   G  C    PW +
Sbjct: 472 WKPSMHGGVCDPYTPWHT 489


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 136 TKVSSPDGCSSDTWLSVAT*VRPQSALPPGG 228
           T+ +SP+      WL+ A+     +ALP  G
Sbjct: 24  TRSNSPEAGGGGFWLAAASGAPHPAALPIEG 54


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,768
Number of Sequences: 336
Number of extensions: 3343
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)