Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021913
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 48 9e-07
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 42 8e-05
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 36 0.005
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 28 1.3
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 27 1.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.3
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 3.0
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 3.0
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 4.0
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.0
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 7.0
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 25 7.0
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 9.3
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 25 9.3
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 9.3
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 48.4 bits (110), Expect = 9e-07
Identities = 23/57 (40%), Positives = 33/57 (57%)
Frame = +3
Query: 6 GLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLISGWLFFRYM 176
G L +Q+LW+N++ DG PA +LG D D+M KPPR + +IS L R +
Sbjct: 707 GFQNPLNAMQILWINILMDGPPAQSLGVESVDEDVMMKPPRPRNAPIISVQLLQRVL 763
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 41.9 bits (94), Expect = 8e-05
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 21 LIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLIS 152
L VQLLWVNL+ D L A AL +PP +++ + P K L +
Sbjct: 968 LTAVQLLWVNLIMDTLAALALATDPPTPEVLKRKPEKPGASLFT 1011
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 35.9 bits (79), Expect = 0.005
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 27 PVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGL 146
PV++LW N++T P+ LG D+M++ P G+
Sbjct: 795 PVEILWCNMITSSFPSMGLGMELAQPDVMERLPHDNKVGI 834
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 436 AALVKLVARRLHGALLHSSFRHPLLEVLSAVFQVT-PLSLDE 558
AA L+ R++H ++ SF+ L + LS + ++T P+++D+
Sbjct: 105 AAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITLPVNVDD 146
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 459 SSAPWRSPSLFISSSSTRGSFGRVPSDA 542
S P+ P +F+S GS+G+ P DA
Sbjct: 88 SLRPYAEPFIFLSYKQPDGSYGKGPKDA 115
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 610 ALHPAVPRVLRPSLRLPTRRATAASLGTRPKEP 512
+++PA+ +P L P+ R +AA+L K P
Sbjct: 279 SMNPAINSTSKPPLPPPSSRVSAAALAANKKRP 311
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +1
Query: 454 VARRLHGALLHSSFRHPLLEVLSAVFQV 537
+A LHG H++ HP + L ++++
Sbjct: 206 LANYLHGCFYHNTLSHPYQDALKFIYEI 233
Score = 25.0 bits (52), Expect = 9.3
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +1
Query: 520 SAVFQVTPLSLDEWVTVMKVSVPVVLLDEVL 612
S+ F + LDE++ + ++P+ L+ ++L
Sbjct: 4482 SSSFDIASFQLDEYLNTLPSNIPINLVQKIL 4512
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.0
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 248 TSMTYWQLTHHLQCISGGDEFKGVDCKVFTDPHPMTMALSVLVTIEMLN-AMNSLSENQS 424
T++ QL +HLQ I+ EF G+ K F ++ ++ ++++ A ++L Q
Sbjct: 322 TALNEIQLANHLQVIANAFEFSGMYAKEFEQEFNSSVYEKMVQSMQLAKCAADALKYKQL 381
Query: 425 LVTMPPWSNLWLVGSMALSFT 487
+ + L+ S +S T
Sbjct: 382 KIQQRDFLQDQLIHSNTMSAT 402
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 568 RLPTRRATAASLGTRPKEPRVEDDEMKSEGE 476
R+ RR+TAAS P R DE++ + E
Sbjct: 296 RVSPRRSTAASKKKSPSSKRASSDEIEKDKE 326
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -1
Query: 269 VASMSLRSV-RGVHE--PPGGSADCGRTYVATDSHVSEEQPSGD 147
VA+ +LRS R + E G S DC T D +SE+Q SG+
Sbjct: 398 VATSNLRSTKRKLSEILENGQSGDCSLTDTNVDFDISEKQASGN 441
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +2
Query: 311 KGVDCKVFTDPHPMTMALSVLVTIEMLNAMNSLSENQSLVTMPPWSNLWLVGSMALSF 484
K V FT+ P + S+ T+ L S QS T W N +G + LSF
Sbjct: 1586 KLVKGSTFTNVSPHDLLNSLAYTVSSLEVSQRCSPKQSGATRSVWFN--ELGPLTLSF 1641
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 343 SPDDDGSLSAGHNRDVKRHEQ 405
SPDD LSAG +R V HEQ
Sbjct: 587 SPDDRYILSAGRDRLVCLHEQ 607
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 245 RTSMTYWQLTHHLQCISGGDE 307
R+ M +TH+L+C+S DE
Sbjct: 2243 RSKMLTQSITHYLKCLSESDE 2263
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 523 AVFQVTPLSLDEWVTVMKVSVPVVLLDEVL 612
A + PL LD+W + K+ LLD +L
Sbjct: 297 AAENLQPLPLDDWKRIFKLPAEPRLLDSLL 326
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -2
Query: 577 PSLRLPTRRATAASLGTRPKEPRVEDDEMKSEGERHGADEPQ 452
P + L ++ ++++L ++PK +V D S ++ +D PQ
Sbjct: 201 PRIVLGSKPVSSSTLPSKPKSFQVFSDASSSRDSQNASDLPQ 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,011
Number of Sequences: 5004
Number of extensions: 52617
Number of successful extensions: 156
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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