Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021913
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)               72   3e-13
SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.049
SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12)       33   0.20 
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.34 
SB_19943| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_48443| Best HMM Match : RecQ5 (HMM E-Value=6.2)                     28   7.4  
SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)        28   7.4  
SB_20350| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_10789| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  
SB_1077| Best HMM Match : rve (HMM E-Value=2.1e-17)                    27   9.8  
SB_55793| Best HMM Match : Spermine_synth (HMM E-Value=1.6e-15)        27   9.8  
SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)                27   9.8  
SB_35831| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_28931| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_15517| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)               27   9.8  

>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 32/37 (86%), Positives = 34/37 (91%)
 Frame = +3

Query: 3   LGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIM 113
           LG+PEALIPVQLLWVNL+TDG PATAL FNPPD DIM
Sbjct: 783 LGMPEALIPVQLLWVNLMTDGPPATALSFNPPDSDIM 819


>SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1154

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 22/50 (44%), Positives = 32/50 (64%)
 Frame = +3

Query: 3   LGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLIS 152
           L LP  L  +Q+LW+N++ DG PA +LG  P D D+M +PPR     +I+
Sbjct: 767 LKLPNPLNAMQILWINIIMDGPPAQSLGVEPVDSDVMRRPPRNVKSPMIT 816



 Score = 32.3 bits (70), Expect = 0.34
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 517  LSAVFQVTPLSLDEWVTVMKVSVPVVLLDEVLKFVARKIS 636
            L AVFQ   L + + + ++ VS  V ++DE+ KF+  ++S
Sbjct: 908  LQAVFQTEALHITDILLLLAVSSSVFIVDEIRKFITYRVS 947


>SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +3

Query: 6   GLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPR 128
           G+P+ L  + +L ++L TD +PA +L +   + DIM + PR
Sbjct: 253 GIPQPLGTITILCIDLGTDMVPAISLAYEEAESDIMKRMPR 293


>SB_52466| Best HMM Match : Cation_ATPase_C (HMM E-Value=6.7e-12)
          Length = 573

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 33  QLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLIS 152
           QLLW+NL+ D L + AL  + P  DI+   P   ++ LIS
Sbjct: 238 QLLWLNLIMDALASLALTGDHPTDDILRHKPYGRNKPLIS 277


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +3

Query: 420 SLWSPCRPGQTCGSSAPWRSPSLFISSS--STRGSFGRVPSDAAVARRVGNRNEGLSTRG 593
           S   PC PG+ CGS     +PS   +      RG++ R P+D  V R   N ++   +  
Sbjct: 627 SACEPCLPGKYCGSEG-LTNPSGDCAKGFYCVRGAWSREPTDMGVMRYFSNASQCYCSNE 685

Query: 594 TAG 602
           T G
Sbjct: 686 TTG 688


>SB_19943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 33  QLLWVNLVTDGLPATALGFNPPDLDIMDKPPRKADEGLI 149
           QLLWVNL+ D L + AL  + P  D++   P    + LI
Sbjct: 72  QLLWVNLIMDSLASLALTRDFPTDDLLRHQPYGRHKALI 110


>SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1035

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 453 KFDQGGMVTRDWFSDKLFMAFN 388
           KFD+ G++ R WFSD     FN
Sbjct: 607 KFDKHGVMGRKWFSDSTVQQFN 628


>SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +3

Query: 408 CLRTSLWSPCRPGQTCGSSAPWRSPSLFISSSSTRGSFGRVPSDAAVARRVGNR 569
           C    ++ P R  + C S  PW S  L    S  + +F  +  D+A+ +   N+
Sbjct: 613 CKAIEIFLPARRVRVCSSDKPWVSSRLKSLVSRRQSAFKALGKDSAIFKMFRNK 666


>SB_48443| Best HMM Match : RecQ5 (HMM E-Value=6.2)
          Length = 332

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 130 RLTKVSSPDGCSSDTWLSVAT*VRPQSALPPGGSCTPRTDLNDILA-THSSL 282
           +LTK +S +G S DT LSV    RP + +PP  S    TDLN      HSSL
Sbjct: 214 KLTKNNSRNGHSEDTELSVMN--RPDT-IPPSKS---DTDLNSYSKDAHSSL 259


>SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)
          Length = 350

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 503 LYSRFFRPCSK*RRCRSTSG*P**RSQYPWYCWMKC 610
           LY R  R C + R C+S  G    +  Y ++C++KC
Sbjct: 93  LYRRCHRVCRRYRYCKSYFGKH--KCYYKYHCYLKC 126


>SB_20350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +2

Query: 203 HSRRCLLVVHVLPVRTSMTYWQLTHHLQCISGGDEFKGVDCKVFTDPHPMTMALSVLVTI 382
           HS    L+ H  P  T++    + H    I+     K     + T  HP   ++++L TI
Sbjct: 91  HSNTTNLIKH--PDATNL----IKHPTTIITTHPSSKSTTTGIITITHPDANSITILATI 144

Query: 383 EMLNAMNSLSE 415
             +NA +SL E
Sbjct: 145 ITINATSSLPE 155


>SB_10789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 489 FISSSSTRGSF-GRVPSDAAVARRVGNRNEGLSTRGTAG*SAQIRR 623
           F  S+ + GS  G   SDA+V  R G++ +   +RG+   S+  RR
Sbjct: 109 FFGSTDSEGSREGSRGSDASVEVRAGSQTDSQRSRGSTDSSSSFRR 154


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 284 QCISGGDEFKGVDCKVFTDPHPMTMALSV 370
           QC  G  + KG   K+F DP    +A SV
Sbjct: 115 QCFDGVGKLKGTKVKIFVDPDREPVAQSV 143


>SB_1077| Best HMM Match : rve (HMM E-Value=2.1e-17)
          Length = 794

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 236 LPVRTSMTYWQLTHHLQCIS 295
           LP +T+   W+LTH L+CI+
Sbjct: 453 LPEQTATACWRLTHLLRCIA 472


>SB_55793| Best HMM Match : Spermine_synth (HMM E-Value=1.6e-15)
          Length = 317

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +1

Query: 355 DGSLSAGHNRDVKRHEQLV*EPVSGHHAALVKLVARRLHGALLHSSFRHPLLEVLSAV 528
           DG +      +   HE L   P+  H AA   L+     G +L    +HP +E ++ V
Sbjct: 226 DGIIQTTERDEFIYHEMLTHTPLFAHGAAKRVLIIGGGDGGILREVLKHPEVEHVTQV 283


>SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)
          Length = 882

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 489 FISSSSTRGSF-GRVPSDAAVARRVGNRNEGLSTRGTAG*SAQIRR 623
           F  S+ + GS  G   SDA+V  R G++ +   +RG+   S+  RR
Sbjct: 784 FFGSTDSEGSREGSRGSDASVEVRAGSQTDSQRSRGSTDSSSSFRR 829


>SB_35831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 647

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 239 PVRTSMTYWQLTHHLQCIS 295
           P +T+   W+LTH LQCI+
Sbjct: 514 PEQTATACWRLTHLLQCIA 532


>SB_28931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1035

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 236 LPVRTSMTYWQLTHHLQCIS 295
           LP +T+   W+LTH L+CI+
Sbjct: 696 LPEQTATACWRLTHLLRCIA 715


>SB_15517| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
          Length = 799

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 284 QCISGGDEFKGVDCKVFTDPHPMTMALSV 370
           QC  G  + KG   K+F DP    +A SV
Sbjct: 414 QCFDGVGKLKGTKVKIFVDPDREPVAQSV 442


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,251,672
Number of Sequences: 59808
Number of extensions: 462393
Number of successful extensions: 1294
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)