Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021913
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.62 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.7  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 418 PVSGHHAALVKLVARRLHGAL 480
           P SGHHA+   L+A  L G L
Sbjct: 515 PPSGHHASSAPLLAATLAGGL 535


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 483 KESAMEPTSHKFDQGGMVTRDWFSDKLFMAFNISI 379
           + S + P    +D+GG  T  WF   L +  N S+
Sbjct: 5   RSSEINPKEGLYDEGGKHTVHWFRKGLRLHDNPSL 39


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 107 HHGQAPSQG*RRSHLRMAVLQIHGYRW 187
           HHG A  +G R+ + R       G+ W
Sbjct: 156 HHGMAYHRGHRKDYERWVQQGAFGWSW 182


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 261 TGNSLITYNVSAVVMNLRVLTAKCSLTLTR*RWLSQC 371
           +GN L+T+ V  V +N R++     L+L    W  +C
Sbjct: 898 SGNRLVTFPVWQVTLNARLV----ELSLGSNPWSCRC 930


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -1

Query: 557 SSSDSGVTWNTA 522
           SSSDSGVT +T+
Sbjct: 228 SSSDSGVTMSTS 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,987
Number of Sequences: 438
Number of extensions: 3901
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)