Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021911X
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 41 5e-05
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 29 0.30
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 29 0.30
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 27 0.93
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 26 2.1
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 25 2.8
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 25 3.7
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 25 3.7
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.9
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 25 4.9
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 4.9
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 24 6.5
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S... 24 6.5
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 24 6.5
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 24 8.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 24 8.6
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 41.1 bits (92), Expect = 5e-05
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 254 ACGLTPTAVVPLDLVKCRLQXDAEKYKNVVNGFK 355
ACG T +A+ PLDL+KCR Q + Y + GFK
Sbjct: 33 ACGTTHSAITPLDLIKCRKQVNPNIYPGNIAGFK 66
Score = 26.6 bits (56), Expect = 1.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 183 AVPTESCEFGSPKYFALCGVGGVL 254
A P ++ + +P+Y+ LC +GG+L
Sbjct: 9 APPKKTLQLYTPQYYGLCTLGGLL 32
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 28.7 bits (61), Expect = 0.30
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 260 GLTPTAVV-PLDLVKCRLQXDAEKYKNVVNGFKV 358
G T TA+ P D++K R+Q + YKN ++ K+
Sbjct: 221 GATATAITNPFDMLKTRVQLEPHIYKNFLHSAKL 254
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 28.7 bits (61), Expect = 0.30
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 227 RSLRSWWCSACGLT--PTAVVPLDLVKCRLQXDAEKYKNVVN 346
R L S AC +T + P D++K R+Q + KYK+ ++
Sbjct: 112 RPLASALAGACAITISDAFMTPFDVIKQRMQLPSRKYKSALH 153
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 27.1 bits (57), Expect = 0.93
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 281 VPLDLVKCRLQXDAEKYK 334
+P+DLV RL+ DA++YK
Sbjct: 137 LPVDLVPIRLEIDADRYK 154
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 2.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 248 CSACGLTPTAVVPLDLVKCRLQXDA 322
C +T V PLD+VK RLQ ++
Sbjct: 32 CVGSVITTLTVTPLDVVKTRLQSES 56
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 2.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 263 LTPTAVVPLDLVKCRLQXDAEKYKNVV 343
+T + PLD++K ++ E Y+ VV
Sbjct: 180 ITAAVLTPLDVIKTQINLRPESYRKVV 206
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 3.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = +3
Query: 129 STVAPVAIEQTGGMAASAA-----VPTESCEF 209
S V+PVA++Q SAA +P + CEF
Sbjct: 203 SNVSPVALQQARSFQGSAAPSRFLLPIQQCEF 234
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 25.0 bits (52), Expect = 3.7
Identities = 16/53 (30%), Positives = 20/53 (37%)
Frame = +2
Query: 44 LKHNNVLFVARCGAELSVPWPTIARPVPVDGRARGYRADRWHGGVCCGTHGVL 202
+K NN GA+LS A P Y D W+ V T+G L
Sbjct: 388 VKDNNTSLEVEYGADLSTLDQGSAFPSLAKNPVNPYSKDTWNLNVIASTNGSL 440
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 24.6 bits (51), Expect = 4.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 247 PPTPQRAKYLGDPNSQDSVGTAADAAMPP 161
PP P + + L S +S G ++ ++PP
Sbjct: 224 PPAPPKPRRLAARTSSNSSGVSSPTSVPP 252
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 4.9
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +3
Query: 48 NIIMFSSLLDAARNSPFRGPLSP-AQCQSTVAPVAIEQTGGMAASAAVPTESCEFGSPKY 224
N+++ S L ++ + + A ++ AP +T + FGS Y
Sbjct: 347 NVVILLSTLSVGNSASYAASRALFALAKNGYAPKIFNKTNKRGHPIYAIAVTLLFGSIAY 406
Query: 225 FALCGVGGVL 254
F GVGG L
Sbjct: 407 FTEAGVGGAL 416
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.6 bits (51), Expect = 4.9
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 163 VAWRRLLRYPRSPVN---LDRLNISLFAELVV 249
+AW+ +YP P+ D ++L+AEL++
Sbjct: 302 IAWKYFYQYPAPPIGNDIFDLPTLNLYAELLL 333
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 24.2 bits (50), Expect = 6.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 275 AVVPLDLVKCRLQXDAEK 328
A PLD+VK RLQ D K
Sbjct: 65 ATAPLDVVKTRLQSDFYK 82
>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
Trp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 354
Score = 24.2 bits (50), Expect = 6.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 141 PVAIEQTGGMAASAAVPTESCEFGSPKYFALCGVGGVLH 257
P + QT + S + P + E SP++ + G GG H
Sbjct: 61 PDILMQTVQILKSYSTPIANIEMVSPRFVDIVGTGGDGH 99
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 24.2 bits (50), Expect = 6.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 247 PPTPQRAKYLGDPNS 203
PP PQR++ + PNS
Sbjct: 414 PPLPQRSRTISSPNS 428
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 23.8 bits (49), Expect = 8.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 69 LLDAARNSPFRGPLSPAQCQSTVAPVAIEQT 161
LLDA R F+GPL ST + A + T
Sbjct: 837 LLDANRQLIFKGPLKKRSAGSTSSESASDVT 867
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 23.8 bits (49), Expect = 8.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 105 PLSPAQCQSTVAPVAIEQTGGMAASAAVPTES 200
P S STVAP + + G ++ +PT S
Sbjct: 604 PTSTPLSNSTVAPTSTFTSSGFNTTSGLPTSS 635
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,905
Number of Sequences: 5004
Number of extensions: 26258
Number of successful extensions: 90
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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