Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021911X
(369 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26) 62 1e-10
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 0.29
SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.89
SB_25940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 29 1.6
SB_10272| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72) 27 4.8
SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0) 27 4.8
SB_15258| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_9851| Best HMM Match : Hint (HMM E-Value=1.30321e-43) 27 4.8
SB_57874| Best HMM Match : LIM (HMM E-Value=0.44) 27 6.3
SB_37757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_54230| Best HMM Match : EGF (HMM E-Value=0) 27 6.3
SB_23904| Best HMM Match : RdRP (HMM E-Value=0) 27 6.3
SB_42679| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08) 26 8.3
SB_32741| Best HMM Match : Filament (HMM E-Value=0.39) 26 8.3
SB_5197| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11) 26 8.3
SB_24121| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08) 23 9.7
>SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26)
Length = 205
Score = 62.1 bits (144), Expect = 1e-10
Identities = 32/66 (48%), Positives = 40/66 (60%)
Frame = +3
Query: 57 MFSSLLDAARNSPFRGPLSPAQCQSTVAPVAIEQTGGMAASAAVPTESCEFGSPKYFALC 236
MFS + A+NS PLS A+C S V + + + ASAA SCEFGS KY+ALC
Sbjct: 1 MFSRYFETAKNSTLGDPLSVAKCPSDVR--SHRNSSRLMASAAGEQHSCEFGSAKYYALC 58
Query: 237 GVGGVL 254
G GG+L
Sbjct: 59 GFGGIL 64
Score = 61.3 bits (142), Expect = 2e-10
Identities = 25/38 (65%), Positives = 34/38 (89%)
Frame = +2
Query: 254 ACGLTPTAVVPLDLVKCRLQXDAEKYKNVVNGFKVSVR 367
+CGLT TAVVPLDLVKCR+Q D +KY ++VNGFK++++
Sbjct: 65 SCGLTHTAVVPLDLVKCRIQVDPKKYGSMVNGFKITLK 102
>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1829
Score = 31.1 bits (67), Expect = 0.29
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 244 PTPQRAKYLGDPNSQDSVGTAADAAMPPVCSIATGATVDWHWAGDSG 104
P P RA L P + S G+ A+ A PP +ATG + + SG
Sbjct: 816 PPPGRASQL--PLQEQSSGSRAEEASPPPALVATGPSASYRLPNASG 860
>SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 29.5 bits (63), Expect = 0.89
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 211 PNSQDSVGTAADAAMPPVCSIATGATVDWHWAGD-SGPRNGEFRAASSNEENIIM 50
P Q T A PPV +G+ D W GD S P+ + R+ N +M
Sbjct: 398 PQPQKPPATRPSATPPPVTGDESGSDYDEDWGGDWSEPKPTQSRSIVGEMRNDLM 452
>SB_25940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 125 PVDGRARGYRADRWHGGVCCG 187
P +G+ RG+R GGVCCG
Sbjct: 91 PREGQIRGFRFVHISGGVCCG 111
>SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 123 CQSTVAPVAIEQTGGMAASAAVPTES 200
C ST PV +QT A+SA VPT S
Sbjct: 154 CLSTARPVTTQQTKKPASSAFVPTTS 179
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 28.7 bits (61), Expect = 1.6
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 6/38 (15%)
Frame = +2
Query: 272 TAVVPLDLVKCRLQ-----XDAEK-YKNVVNGFKVSVR 367
TAV P+DLVK R+Q +AEK YKN ++ F VR
Sbjct: 929 TAVYPIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVR 966
>SB_10272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 68 VARCGAELSVPWPTIARPVPVDGRARGYRADRWHGGVCCGTHGVL 202
+ RCG + W +P P++GR R W G C +L
Sbjct: 338 IRRCGTH-APGWMVGRQPSPIEGRVRRTVCFNWAGNCCKWRQNIL 381
>SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)
Length = 1161
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/75 (21%), Positives = 27/75 (36%)
Frame = -3
Query: 274 RGGQTACRTPPTPQRAKYLGDPNSQDSVGTAADAAMPPVCSIATGATVDWHWAGDSGPRN 95
R G+ + P R + P S+ A C + A+ + AG GP
Sbjct: 747 RYGEWRHKKPGYEWRPEAAWGPKKSGSLAREPSTAPSLFCDLVAAASAKMYLAGQGGPGK 806
Query: 94 GEFRAASSNEENIIM 50
E+ + NI++
Sbjct: 807 TEWAVSMFRGRNIVV 821
>SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 1737
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -3
Query: 301 LHQVEGHHGRGGQTACRTPPTPQRAKYLGDPNSQDSVGTAADAAMP 164
LH++ HH G+ R + +LG+ + Q + AD MP
Sbjct: 268 LHRLYPHHLMLGEEGQRVVEDTLKTFHLGEKSEQPQSSSVADVTMP 313
>SB_15258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 27.1 bits (57), Expect = 4.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 104 PTIARPVPVDGRARGYRADRW 166
P + R +DGR +GYR +W
Sbjct: 3 PRVHRSYALDGRCKGYRFKKW 23
>SB_9851| Best HMM Match : Hint (HMM E-Value=1.30321e-43)
Length = 493
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = -3
Query: 250 TPPTPQRAKYLGDPNSQDSV--GTAADAAMPPVCSIATGATVDWHWAGDSGPRNGEFRA 80
TP +A DP + S+ + A +C V + W G+S R+ FRA
Sbjct: 426 TPNVLDKASMFIDPRDEVSIRDNSGRVALQVVICVAKLHVVVHFAWTGESNSRDFHFRA 484
>SB_57874| Best HMM Match : LIM (HMM E-Value=0.44)
Length = 1037
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 104 PTIARPVPVDGRARGYRADRW 166
P + R +DGRA GYR +W
Sbjct: 334 PRVHRSYALDGRAIGYRFKKW 354
>SB_37757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 905
Score = 26.6 bits (56), Expect = 6.3
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 262 TACRTPPTPQRAKYLGDPNSQDSVGTAADAAMPPVCSIATGATVDW 125
T+ RTP T ++ +SQD + + A+PP C GAT W
Sbjct: 590 TSIRTPVTQHPPVHV--THSQD-LELRIEIALPPGCHFTEGATSRW 632
>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
Length = 1359
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 102 GPLSPAQCQSTVAPVAIEQTGGMAASAAVPTESCEFGSP 218
G L A + +APV GG + A +S +FGSP
Sbjct: 161 GSLPMAPQPTRMAPVLAATAGGSSLIAGSSVQSSKFGSP 199
>SB_23904| Best HMM Match : RdRP (HMM E-Value=0)
Length = 1511
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 321 ASXWRRHFTRSRGTTAVGVRPHAEHHQLRKER 226
A+ +R +SRGT+ V + PH E ++ RK +
Sbjct: 1227 ATEKQRDVGKSRGTSGVRLVPHVESNRERKRK 1258
>SB_42679| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)
Length = 537
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 296 VKCRLQXDAEKYKNVVNGFKVSVR 367
V C L E+Y++VVN KV V+
Sbjct: 301 VSCSLVLTYERYRSVVNSVKVKVK 324
>SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)
Length = 1814
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2
Query: 305 RLQXDAEKYKNVV 343
RLQ D EKYKNVV
Sbjct: 1190 RLQKDVEKYKNVV 1202
>SB_5197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 26.2 bits (55), Expect = 8.3
Identities = 18/69 (26%), Positives = 24/69 (34%)
Frame = -3
Query: 253 RTPPTPQRAKYLGDPNSQDSVGTAADAAMPPVCSIATGATVDWHWAGDSGPRNGEFRAAS 74
R T R +YL NS G I V +W P N EF +
Sbjct: 417 RNGGTSGRTEYLFTTNSSPEGGVCFSEPTAGEALITNFKIVCTNWTDSDKPLNYEFSYSE 476
Query: 73 SNEENIIMF 47
S +E ++ F
Sbjct: 477 SGKEVLLSF 485
>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
Length = 2297
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 248 CSACGLTPTAVVPLDLVKCRLQXDAEKYKNVVNGFK 355
C+A G T T VP ++ K L+ +K +VNG K
Sbjct: 2064 CTAAGYTTTFPVPPNVSKRSLRWVGFYHKYLVNGVK 2099
>SB_24121| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)
Length = 320
Score = 23.0 bits (47), Expect(2) = 9.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 369 SRTDTLKPFTTFLY 328
S D ++PFT FLY
Sbjct: 104 SAADDIRPFTVFLY 117
Score = 21.4 bits (43), Expect(2) = 9.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 321 ASXWRRHFTRSRGTTAVGV 265
AS +R FTR R A+GV
Sbjct: 139 ASKYRVIFTRKRAYIAIGV 157
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,888,118
Number of Sequences: 59808
Number of extensions: 246444
Number of successful extensions: 828
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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