Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021910
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb... 27 2.3
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 27 3.1
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 3.1
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 7.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.1
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 9.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 9.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 9.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 9.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 9.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 9.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 9.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.4
>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 240
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 128 VQQLCFIFPHLCTFTDIK-QLINHHYYTFKPE 36
+QQ+C +F H T D + Q++ Y+ PE
Sbjct: 161 LQQICVVFKHKQTSQDTRFQILEFFYFYLSPE 192
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 511 NKTLPLKLTQWIPLNSVLNSIIIFLHRILNCSTKPKK 401
N TLPL T+ + L VL ++ F+H N + +K
Sbjct: 370 NNTLPLLTTKRVFLRGVLEELLWFIHGDTNANHLSEK 406
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 506 FISKWISKLENSFKGKTQFIVCKLFQKSVVSTYR 607
F+ + S + N+F TQ I+ KL+ K +++ R
Sbjct: 281 FVEEVFSNIRNAFAFGTQDILAKLYNKYLITAQR 314
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 87 ESAQMWENETKLLDVTSRVPPKSPLKK 167
ES + ENE +DVT VPP L +
Sbjct: 25 ESEKEGENEVLEIDVTKPVPPSKKLMR 51
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -2
Query: 180 SFTEIFSVDFLEEPEKLRPAALFHFP 103
SF IFS F EEPE + F P
Sbjct: 1836 SFDNIFSYIFSEEPESKKSPIWFELP 1861
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 450 IELRTEFNGIHCVSFKGSVLFPNGFQNSKTLSKEKHNLLFVN 575
I ++TEF + S ++ F + N+ +S KH L +N
Sbjct: 322 ISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMN 363
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 450 IELRTEFNGIHCVSFKGSVLFPNGFQNSKTLSKEKHNLLFVN 575
I ++TEF + S ++ F + N+ +S KH L +N
Sbjct: 322 ISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMN 363
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 450 IELRTEFNGIHCVSFKGSVLFPNGFQNSKTLSKEKHNLLFVN 575
I ++TEF + S ++ F + N+ +S KH L +N
Sbjct: 322 ISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMN 363
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 450 IELRTEFNGIHCVSFKGSVLFPNGFQNSKTLSKEKHNLLFVN 575
I ++TEF + S ++ F + N+ +S KH L +N
Sbjct: 322 ISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMN 363
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 450 IELRTEFNGIHCVSFKGSVLFPNGFQNSKTLSKEKHNLLFVN 575
I ++TEF + S ++ F + N+ +S KH L +N
Sbjct: 322 ISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMN 363
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 450 IELRTEFNGIHCVSFKGSVLFPNGFQNSKTLSKEKHNLLFVN 575
I ++TEF + S ++ F + N+ +S KH L +N
Sbjct: 322 ISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMN 363
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 450 IELRTEFNGIHCVSFKGSVLFPNGFQNSKTLSKEKHNLLFVN 575
I ++TEF + S ++ F + N+ +S KH L +N
Sbjct: 322 ISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMN 363
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 450 IELRTEFNGIHCVSFKGSVLFPNGFQNSKTLSKEKHNLLFVN 575
I ++TEF + S ++ F + N+ +S KH L +N
Sbjct: 322 ISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMN 363
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 450 IELRTEFNGIHCVSFKGSVLFPNGFQNSKTLSKEKHNLLFVN 575
I ++TEF + S ++ F + N+ +S KH L +N
Sbjct: 322 ISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMN 363
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 450 IELRTEFNGIHCVSFKGSVLFPNGFQNSKTLSKEKHNLLFVN 575
I ++TEF + S ++ F + N+ +S KH L +N
Sbjct: 322 ISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMN 363
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 450 IELRTEFNGIHCVSFKGSVLFPNGFQNSKTLSKEKHNLLFVN 575
I ++TEF + S ++ F + N+ +S KH L +N
Sbjct: 322 ISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSSKHTLSQMN 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,554
Number of Sequences: 5004
Number of extensions: 53222
Number of successful extensions: 149
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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