Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021910
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17550| Best HMM Match : WW (HMM E-Value=0.0012)                     28   7.5  
SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)                  28   7.5  

>SB_17550| Best HMM Match : WW (HMM E-Value=0.0012)
          Length = 677

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 485 CQFQRECFISKWISKLENSFK 547
           C   R C I+ W+S ++NSF+
Sbjct: 57  CSKTRACHIANWLSSVDNSFE 77


>SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)
          Length = 918

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 514 GNKTLPLKLTQWIPLNSVLNSIIIFLHR 431
           G KT   K  +WIP ++ L  +++FLH+
Sbjct: 737 GKKTSAWK-RKWIPFHATLKGMVLFLHK 763


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,695,642
Number of Sequences: 59808
Number of extensions: 330839
Number of successful extensions: 539
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)