Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021910
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26920.1 68416.m03368 F-box family protein contains F-box dom...    28   6.1  
At5g49830.1 68418.m06171 expressed protein                             27   8.1  

>At3g26920.1 68416.m03368 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 565

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 477 IHCVSFKGSVLFPNGFQNSKTL 542
           +H  S KGS +FP G  N +TL
Sbjct: 379 LHVESVKGSFIFPTGLYNCETL 400


>At5g49830.1 68418.m06171 expressed protein
          Length = 752

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 498 GSVLFPNGFQNSKTLSKEKHNLLFVNYFRRVWYLLIEKLGS 620
           GS      FQN  T S  + NL+  ++F  V  LL  +LGS
Sbjct: 396 GSRHASTAFQNKLTSSAHRFNLMVQDFFEDVGPLLSMQLGS 436


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,977,983
Number of Sequences: 28952
Number of extensions: 252563
Number of successful extensions: 551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)