Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021909
         (587 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    26   0.27 
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    25   0.63 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   1.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   1.4  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   2.5  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   4.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.4  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   7.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.7  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 468 PPTPRGVPLPAAPTPRPSVLAPLAASEN 385
           PP P+  PLP  P   P+++ P A  E+
Sbjct: 175 PPLPQVPPLPLPPIFPPTMINPSAICES 202


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -3

Query: 165 VCKRIVYGWVTKRIVF 118
           +CK   +G++TK+++F
Sbjct: 525 ICKNFCFGFITKQLIF 540


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 433 RGGKRNSARGRRVATITGRPSRASVHTAVLLPGYQRRHTTRVPEDR 570
           +GG+R +AR   V T     +RAS  T +  P Y R     +P  R
Sbjct: 38  QGGRRRAARPGVVTTPRWGCARASSATTMGGPRYGRAAAQGMPYPR 83


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 465 PTPRGVPLPAAPTPRPSVLAPLAASEN 385
           P P+  PLP  P   P+++ P A  E+
Sbjct: 176 PLPQVPPLPLPPIFAPTMINPSAICES 202


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 368 KFHNC*FSEAARGARTEGRGVGAAGSGTPRGVGGSP 475
           +  N   +E   G   +G G GAA SG+     G P
Sbjct: 104 RLDNMLIAEGVAGPE-KGGGAGAAASGSAAAQAGQP 138


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 165 PVGSASCTEYKQCYTWFRRLQ 227
           P+G  SC  Y QC   + RLQ
Sbjct: 165 PLGK-SCNRYWQCQGGYPRLQ 184


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 241 QQNVNNPRLSNSNQHN 288
           QQN NN   +N N H+
Sbjct: 309 QQNNNNAATNNQNHHH 324


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 462 TPRGVPLPAAPTPRPSV 412
           TP G+P P+     P+V
Sbjct: 220 TPTGIPTPSTSASPPTV 236


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 465 PTPRGVPLPAAP 430
           PTP  VP P++P
Sbjct: 55  PTPGDVPTPSSP 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,341
Number of Sequences: 336
Number of extensions: 2803
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)