Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021909
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 29 0.38
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 1.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 3.5
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 26 4.7
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 25 6.2
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 6.2
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 25 6.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 8.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.2
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 29.5 bits (63), Expect = 0.38
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 485 AAPPGLLSIQPCFYQDINVDIPLE 556
AA PG+ +I PCF + + +D+P++
Sbjct: 227 AAFPGVQAIIPCFLKMVQIDVPID 250
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 468 PPTPRGVPLPAAPTPRPSVLAP 403
PP P VP A P P+PSV AP
Sbjct: 1131 PPVP--VPSGAPPVPKPSVAAP 1150
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 474 GDPPTPRGVPLPAAPTPRPSVLAP 403
G PP P +P P P+PSV AP
Sbjct: 1081 GAPPVPAPSGIP--PVPKPSVAAP 1102
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 468 PPTPRGVPLPAAPTPRPSVLAP 403
PP P P A P P+PSV AP
Sbjct: 1112 PPVP--APSGAPPVPKPSVAAP 1131
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 468 PPTPRGVPLPAAPTPRPSVLAP 403
PP P P A P P+PSV AP
Sbjct: 1150 PPVP--APSGAPPVPKPSVAAP 1169
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -3
Query: 471 DPPTPRGVPLPAAPTPRPSVLAPLAASENQQL*NLVEALKPAV 343
D PTPR + T + SV PLA E QQ+ L EA++ A+
Sbjct: 2711 DVPTPRKLTFQCFMTLQKSVSQPLAIKEFQQV--LSEAIQLAL 2751
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -3
Query: 468 PPT--PRGV-PLPAAPTPRPSVLAPLAASENQ 382
PPT P+ PLPA P P P L P + + +Q
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQ 255
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +1
Query: 211 GLEDYNPFDGQQNVNNPRLSNSNQHNRQSCRLCHHQPAASTQDPHSRLQRLHQI 372
G+EDYN Q N LSN ++ +Q + +D LQ + +I
Sbjct: 43 GIEDYNEIFSQINAAYNILSNDDKRKWHEKDYLRNQYSVQIEDVLQHLQTIEKI 96
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 235 DGQQNVNNPRLSNSNQHNRQS--CRLCHHQPAASTQDPH 345
D QNVN P+ + SN H+ QS L ++ ++PH
Sbjct: 131 DDLQNVNEPQDAYSNDHDIQSKDTELLGNEYCLEWKNPH 169
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -2
Query: 550 WYV-DVDILVEARLYGQKPGRGGQL 479
WY+ D D L G KPG GG+L
Sbjct: 1010 WYLSDADELQIKMAQGAKPGEGGEL 1034
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 299 AGCVTTSQQPVHKTRTAGFSASTKFHN 379
+GC + ++QP+ KT +TKF N
Sbjct: 318 SGCGSFAEQPLGKTSPGRLPGTTKFSN 344
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 468 PPTPRGVPLPAAPTPRPSVLAPLAASENQQL*NLVE 361
PP P P PAA P P PL + L N ++
Sbjct: 5 PPPPPPAPAPAAAAPAP----PLMTGDRSALLNSIQ 36
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -3
Query: 498 PGGAASYCGDPPTPRGVPLPAAPTPRPSVLAPLA 397
P GA + G+P P VPL T P P A
Sbjct: 1910 PAGATAISGNPGMPAPVPLTGKETAVPLSSMPNA 1943
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,461
Number of Sequences: 5004
Number of extensions: 44336
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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