Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021909
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.0  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
 Frame = +1

Query: 73  KLNNSAEN--LLRMSKFEDNPFSDPT----IDNPFADPSVQQVARSTNNATRGLEDYNPF 234
           ++NN+  N  LL +S    N  ++      ++      +V  + R++  A    +D N +
Sbjct: 366 RVNNTQRNEYLLALSDRNQNVLNNDLNLEHVNFQILGANVNDLIRNSRCANFDNQDNNHY 425

Query: 235 DGQQNVNNPRLSNSNQHNRQSCRLCHHQPAASTQ 336
           +   N       + NQ+N Q     HH   ++ +
Sbjct: 426 NHNHNQARHSSKSDNQNNNQHNDQAHHSSKSNNR 459


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 474 GDPPTPRGVPLPAAPTPRPSVLAPLAA 394
           GD  TP   P PA P P PS   P +A
Sbjct: 333 GDSDTP---PKPAPPPPPPSSSGPDSA 356


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
 Frame = +1

Query: 103 RMSKFEDNPFSDPTIDNPFADPSVQQVARST----NNA------TRGLEDYNPFDGQQNV 252
           RM K  ++ F+   ++      +V+++ R+T    NN       T    D N  + ++N 
Sbjct: 382 RMQKIVNDDFNFDDVNFRILGANVKELIRNTHCVNNNQNDNIQNTNNQNDNNQKNNKKNA 441

Query: 253 NNPRLSNSNQH 285
           NN + +N N +
Sbjct: 442 NNQKNNNQNDN 452


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 170 DGSAKGLSMVGSLNGLSSNLDIL 102
           DG  + L +VG L G++S +  L
Sbjct: 729 DGKFQVLQLVGMLRGIASGMQYL 751


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +1

Query: 121 DNPFSDPTI----DNPFADPSVQQVARSTNNATRGLED 222
           DNP S   +    +NPF+D   ++V+++  N+ + + D
Sbjct: 313 DNPESTGNLVYIYNNPFSDVEERRVSKTAMNSNQIVSD 350


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 459 PRGVPLPAAPTPRPSVLAPL 400
           PRG  LP   TP P+ +  L
Sbjct: 151 PRGGSLPTPVTPTPTTVQQL 170


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = -3

Query: 474 GDPPTPRGVPLPAAPTPRP 418
           G PP P   P P  P   P
Sbjct: 37  GSPPNPSQGPPPGGPPGAP 55


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 413  TEGRGVGAAGSGTPRGVGGSPQ*LAA 490
            +EG G   AG G   G+GG+ +  AA
Sbjct: 1703 SEGGGGSLAGLGGLGGLGGAAEASAA 1728


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 413  TEGRGVGAAGSGTPRGVGGSPQ*LAA 490
            +EG G   AG G   G+GG+ +  AA
Sbjct: 1699 SEGGGGSLAGLGGLGGLGGAAEASAA 1724


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,378
Number of Sequences: 438
Number of extensions: 3450
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)