Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021908
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 129 3e-31
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 80 3e-16
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 80 3e-16
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 79 4e-16
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 73 4e-14
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 71 2e-13
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 60 2e-10
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 60 2e-10
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 35 0.010
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 27 2.1
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 27 2.7
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 27 2.7
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 26 4.8
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 6.3
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p... 25 8.4
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 129 bits (311), Expect = 3e-31
Identities = 64/89 (71%), Positives = 77/89 (86%)
Frame = +3
Query: 255 LEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 434
L+VEHPA KVLVELAQ QD+EVGDGTTSVVIIAAELL+ A+ELVK KIHPT+II+GYRLA
Sbjct: 70 LDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLA 129
Query: 435 CKEAVKYIQDNLTVTVESLGRPSLITQPK 521
+EAVK++ D L+ +V+SLG+ SLI K
Sbjct: 130 IREAVKFMTDVLSCSVDSLGKESLINVAK 158
Score = 81.8 bits (193), Expect = 7e-17
Identities = 39/57 (68%), Positives = 45/57 (78%)
Frame = +1
Query: 76 LSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 246
L ++G + G+ VR QNV+ N+VKSSLGPVGLDKMLVDDIGDVTVTNDGATI
Sbjct: 10 LFLSGEKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 66
Score = 43.2 bits (97), Expect = 3e-05
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2
Query: 509 NTAKTTMSSKLIGADADFFSEMVVDAAQAI 598
N AKT+MSSK+IG D+DFFS M VDA ++
Sbjct: 155 NVAKTSMSSKIIGNDSDFFSTMAVDAMLSV 184
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 79.8 bits (188), Expect = 3e-16
Identities = 38/79 (48%), Positives = 55/79 (69%)
Frame = +3
Query: 246 IENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 425
+ +EV HPA K ++ELA+ QDEEVGDGTTSV+I+A E+L A L+ KIHP +I +
Sbjct: 65 LREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSF 124
Query: 426 RLACKEAVKYIQDNLTVTV 482
+ A ++A+ I D +T+ V
Sbjct: 125 KQALEDALSII-DEITLPV 142
Score = 43.2 bits (97), Expect = 3e-05
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 76 LSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 246
++ G R G + N+ +++++ LGP + KML+D +G V +TNDG I
Sbjct: 8 MNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAI 64
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 79.8 bits (188), Expect = 3e-16
Identities = 35/68 (51%), Positives = 53/68 (77%)
Frame = +3
Query: 246 IENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 425
++++ +++ A KVLV ++++QD+EVGDGTTSV + AAELL+ A+ +V KIHP II GY
Sbjct: 67 LKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGY 126
Query: 426 RLACKEAV 449
R+A K A+
Sbjct: 127 RIATKTAI 134
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +1
Query: 85 AGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKML-VDDIGDVTVTNDGATI*K 252
+G + G+ R + + ++VKS+LGP G+DK+L + GD+ VTNDGATI K
Sbjct: 12 SGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILK 68
Score = 31.1 bits (67), Expect = 0.13
Identities = 12/39 (30%), Positives = 27/39 (69%)
Frame = +2
Query: 470 HSNSRVTWQAVSDNTAKTTMSSKLIGADADFFSEMVVDA 586
+S+ +++ +N A+TT+SSK++ + + F+++ VDA
Sbjct: 144 NSSDPAKFRSDLENIARTTLSSKILSQNKNHFAQLAVDA 182
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 79.4 bits (187), Expect = 4e-16
Identities = 34/71 (47%), Positives = 51/71 (71%)
Frame = +3
Query: 246 IENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 425
++ +EVEH K+LV+L++ QD+E+GDGTT VV++A LL+ A+ L+ IHP I GY
Sbjct: 80 LDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGY 139
Query: 426 RLACKEAVKYI 458
AC+ AVK++
Sbjct: 140 EKACQVAVKHL 150
Score = 51.2 bits (117), Expect = 1e-07
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = +1
Query: 106 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 246
D V++ +++ NIV++SLGP GLDK+L+ G++TVTNDGATI
Sbjct: 34 DAVKS-HILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATI 79
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 512 TAKTTMSSKLIGADADFFSEMVVDAAQAI 598
+AKT++ SK++ D F+ + VDA ++
Sbjct: 170 SAKTSLGSKVVSKAHDHFANIAVDAVLSV 198
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 72.5 bits (170), Expect = 4e-14
Identities = 38/88 (43%), Positives = 57/88 (64%)
Frame = +3
Query: 246 IENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 425
+++L V HPA K+LV+L+ QD E GDGTTSVVI+A +L A++L+K IHPT I +
Sbjct: 65 LKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESF 124
Query: 426 RLACKEAVKYIQDNLTVTVESLGRPSLI 509
+ A V +++N + +E R SL+
Sbjct: 125 QRAAGFTVDCMKEN-ALAIELSDRESLL 151
Score = 48.0 bits (109), Expect = 1e-06
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = +1
Query: 112 VRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI*K 252
VR N+M + +++SLGP G+DKM+ G+V +TNDGATI K
Sbjct: 20 VRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILK 66
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 70.5 bits (165), Expect = 2e-13
Identities = 35/70 (50%), Positives = 47/70 (67%)
Frame = +3
Query: 255 LEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 434
L++ HPA K LV++A+ QD EVGDGTTSVV+ A ELL+ A V+ + II GYR A
Sbjct: 73 LDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKA 132
Query: 435 CKEAVKYIQD 464
+ AV I++
Sbjct: 133 AQLAVNKIKE 142
Score = 48.0 bits (109), Expect = 1e-06
Identities = 19/44 (43%), Positives = 32/44 (72%)
Frame = +1
Query: 124 NVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI*KI 255
N+ + ++++LGP+G DK++VDD G+V ++NDGATI K+
Sbjct: 29 NINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKL 72
Score = 31.9 bits (69), Expect = 0.073
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2
Query: 515 AKTTMSSKLIGADADFFSEMVVDA 586
A T M+SKLI +++ FF++MVVDA
Sbjct: 163 ASTAMNSKLIRSNSTFFTKMVVDA 186
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 60.1 bits (139), Expect = 2e-10
Identities = 24/71 (33%), Positives = 44/71 (61%)
Frame = +3
Query: 246 IENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 425
+ +++++P + + A QD+ GDGTTSV ++ ELLK A+ ++ +HP+ I G+
Sbjct: 62 LTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGF 121
Query: 426 RLACKEAVKYI 458
LA EA+ ++
Sbjct: 122 NLAKNEALTFL 132
Score = 38.3 bits (85), Expect = 8e-04
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 124 NVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 246
N+ +++KS+LGP G KMLVD G + +T DG +
Sbjct: 21 NISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVL 61
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 60.1 bits (139), Expect = 2e-10
Identities = 26/82 (31%), Positives = 46/82 (56%)
Frame = +3
Query: 246 IENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 425
I LEV HPA K++V+ Q Q+ E+GD VV+ ELL A+ +++ + P I GY
Sbjct: 72 IRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGY 131
Query: 426 RLACKEAVKYIQDNLTVTVESL 491
+A ++ +++ +E++
Sbjct: 132 EMALSHTMEVLEEICADKIETV 153
Score = 32.3 bits (70), Expect = 0.055
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 154 IVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 246
I ++SLGP G +K++V+ + +TND ATI
Sbjct: 41 ITRTSLGPNGKNKIVVNHLQQTFLTNDAATI 71
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 34.7 bits (76), Expect = 0.010
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +3
Query: 264 EHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKE 443
E+ +++ ++A +E GDGTT+ ++ + V +P + G +LA
Sbjct: 98 ENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDN 157
Query: 444 AVKYIQDN 467
V+++Q N
Sbjct: 158 VVEFLQAN 165
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 157 VKSSLGPVGLDKMLVDDIGDVTVTNDGATI 246
V +LGP G + ++ G +T DG T+
Sbjct: 58 VSVTLGPKGRNVLIDQPFGSPKITKDGVTV 87
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 333 TSVVIIAAELLKNADELVKTKIHPTSIISGY 425
T++++++ LL E + TK+HP+ +S Y
Sbjct: 302 TNLIVVSVALLHQWAEELSTKVHPSKKLSVY 332
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 26.6 bits (56), Expect = 2.7
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +2
Query: 164 APLGQLVWIRCWLTILGM 217
+PL +++W+ CW +LG+
Sbjct: 149 SPLSKMMWVFCWRWLLGV 166
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 26.6 bits (56), Expect = 2.7
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +2
Query: 164 APLGQLVWIRCWLTILGM 217
+PL +++W+ CW +LG+
Sbjct: 149 SPLSKMMWVFCWRWLLGV 166
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 167 PLGQLVWIRCWLTILGM 217
PLG+++WI W +LG+
Sbjct: 145 PLGKMMWIFAWRWLLGL 161
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.4 bits (53), Expect = 6.3
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 297 AQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLT 473
A L DE G V+++A + K LV I+P ++ A +K DN+T
Sbjct: 192 ASLLDEGTAAGEAMVMLMANDKKKRKTFLVDKNIYPNTLSVLRTRASGFGIKIELDNIT 250
>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 232
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 390 TKIHPTSIISGYRLACKEAVKYIQDNLTVTVESLGRPSLITQ 515
T +HP I+ +R ++ V Y+Q +L+ + R L Q
Sbjct: 82 THVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQ 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,535
Number of Sequences: 5004
Number of extensions: 43271
Number of successful extensions: 126
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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