Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021908
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   85   5e-17
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   4e-15
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   6e-15
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  74   8e-14
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      70   2e-12
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               66   2e-11
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              49   2e-06
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              45   4e-05
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)             39   0.004
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            34   0.076
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.23 
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)                   29   2.2  
SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17)                     29   2.9  
SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017)                 29   2.9  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              28   6.6  
SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                27   8.7  

>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 35/72 (48%), Positives = 59/72 (81%)
 Frame = +3

Query: 246 IENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 425
           ++++ +++PA K+LVEL+++QD+EVGDGTTSV ++ +ELLK A++LV  KIHP +I++G+
Sbjct: 68  LKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGW 127

Query: 426 RLACKEAVKYIQ 461
           R + K A K ++
Sbjct: 128 RKSVKAAEKALE 139



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
 Frame = +1

Query: 151 NIVKSSLGPVGLDKML--VDDIGDVTVTNDGATI*K 252
           ++VKS+LGP G+DK+L      G++ VTNDGATI K
Sbjct: 34  DLVKSTLGPKGMDKILQSFGQNGNIQVTNDGATILK 69



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 470 HSNSRVTWQAVSDNTAKTTMSSKLIGADADFFSEMVVDA 586
           HS+    ++    N A+TT+SSK++    D F+++ VDA
Sbjct: 145 HSSDPEKFREDLMNIARTTLSSKILVQHRDHFAKLAVDA 183


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 31/75 (41%), Positives = 54/75 (72%)
 Frame = +3

Query: 246 IENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 425
           +  ++V+HPA K ++E+++ QDEEVGDGTTSV+I+A E +  A+  ++ ++HPT II+ Y
Sbjct: 9   LREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAY 68

Query: 426 RLACKEAVKYIQDNL 470
           RLA  + +  ++  +
Sbjct: 69  RLAMDDMIDILKQQI 83


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 31/72 (43%), Positives = 53/72 (73%)
 Frame = +3

Query: 255 LEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 434
           ++V+HPA K ++E+++ QDEEVGDGTTSV+I+A E +  A+  ++ ++HPT II+ YRLA
Sbjct: 209 IQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLA 268

Query: 435 CKEAVKYIQDNL 470
             + +  ++  +
Sbjct: 269 MDDMIDILKQQI 280


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 36/77 (46%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
 Frame = +3

Query: 255 LEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 434
           +EV+H   K++VEL++ QD E+GDGTT VV++A  LL++A++L+   IHP  I  GY LA
Sbjct: 79  MEVDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELA 138

Query: 435 CKEAVKY---IQDNLTV 476
            K A+++   I DN  V
Sbjct: 139 AKIALEHMDSIADNFPV 155



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/44 (50%), Positives = 32/44 (72%)
 Frame = +1

Query: 115 RTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 246
           +  +++      +I+K+SLGP G+DKM+V   G+VTVTNDGATI
Sbjct: 32  KQSHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATI 75


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/56 (53%), Positives = 46/56 (82%)
 Frame = +3

Query: 294 LAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQ 461
           L+++QD+EVGDGTTSV ++A+ELLK A++LV  KIHP +I++G+R + K A K ++
Sbjct: 2   LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALE 57



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 509 NTAKTTMSSKLIGADADFFSEMVVDA 586
           N A+TT+SSK++    D F+++ VDA
Sbjct: 76  NIARTTLSSKILVQHRDHFAKLAVDA 101


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 33/94 (35%), Positives = 58/94 (61%)
 Frame = +3

Query: 240 HNIENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIIS 419
           + ++N +++HP   ++  +A  QD+  GDGTTS V+I  ELLK AD  V   +HP  +  
Sbjct: 164 NGVQNSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTE 223

Query: 420 GYRLACKEAVKYIQDNLTVTVESLGRPSLITQPK 521
           G+ +A K+A++ +++ + V+ E + R +LI   K
Sbjct: 224 GFEVAKKKALEVLEE-VKVSRE-MDRDTLINVAK 255


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 21/45 (46%), Positives = 30/45 (66%)
 Frame = +1

Query: 112 VRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 246
           +R  N+       + +++SLGP G+DKM+    GDVT+TNDGATI
Sbjct: 25  IRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI 69


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 21/50 (42%), Positives = 31/50 (62%)
 Frame = +1

Query: 97  SCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 246
           S G P    N+       + V+++LGP G+DK++VD  G  T++NDGATI
Sbjct: 651 SQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATI 700


>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
          Length = 131

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +2

Query: 509 NTAKTTMSSKLIGADADFFSEMVVDAAQAI 598
           + A T +SSKLIG   DFF+ M+VDA  A+
Sbjct: 15  SAANTALSSKLIGQQGDFFANMIVDAVMAV 44


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 154 IVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 246
           I+K S GP GLD ML    G++ +TN G+ I
Sbjct: 15  ILKKSFGPNGLDVMLRSSSGNILITNSGSMI 45


>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 506 DNTAKTTMSSKLIGADADFFSEMVVDAAQAI 598
           +  A T +SSKLI    +FF++MVVDA   +
Sbjct: 25  ERCAATALSSKLIATQKEFFAKMVVDAVMML 55


>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1331

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +3

Query: 237  CHNIENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSII 416
            CH  EN ++ HPA + LV     + E V     +     A +L N DE +   +   S+ 
Sbjct: 933  CHRGENCKLRHPACRYLVRPENTRQEAVSIRPQNDAHSYAAILANRDETLDHALLNNSVA 992

Query: 417  S 419
            S
Sbjct: 993  S 993


>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 357 ELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNL 470
           E +  A+  ++ ++HPT II+ YRLA  + +  ++  +
Sbjct: 3   EFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQI 40


>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
          Length = 300

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
 Frame = -2

Query: 234 IVSDCNIPNIVNQHLIQTNWPKGALYYVCYSRCCHYILCSHWVSA----GSCPC 85
           +     +PN +   +  T  PKG   Y C  +C +   C H  +     G+C C
Sbjct: 70  VTQGTTVPNAIEGEICNTRCPKGYYGYGCSKKCSN---CQHGATCDPVNGTCSC 120


>SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17)
          Length = 197

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +3

Query: 309 DEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLTVTVES 488
           DE+V DG     I+AAE + +    +     PTS+ +GY +A    V+ I  +  +  + 
Sbjct: 98  DEDVPDGAP---IVAAEAVNSTSLRINCTTLPTSVANGYVIAFNVYVESIDGSHKLIEKK 154

Query: 489 LGRPSLI 509
            G  S++
Sbjct: 155 DGLTSVV 161


>SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017)
          Length = 472

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -2

Query: 243 CGTIVSDCNIPNIVNQHLIQTNWPKGALYYVCYSRCCHYILCSHWV 106
           C  + +DCN        L      +G     CY  CC   LC+++V
Sbjct: 388 CSVVSADCNENGTRCDRLTSVLKDRGLTLKNCYVNCCQGDLCNNFV 433


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 159 YYVCYSRCCHYILCSHWVSAGSCPCYRQRCSYSRHFLLYF*H 34
           YY CY  C +Y  C ++     C CY   C Y  +   Y+ H
Sbjct: 477 YYYCYCYCYYY--CYYY-----CYCYCYYCCYYCYCYYYYHH 511


>SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 1357

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 33  CVKNTIKNVDYSCTFVCSRDKILRRPSENTKCNGSSGYSK 152
           CV+ T  N  + C   CS   + RR   NT C G + Y++
Sbjct: 731 CVRQTYDNRKFIC---CSGRVVPRRFGRNTSCCGFTPYNR 767


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,814,555
Number of Sequences: 59808
Number of extensions: 349895
Number of successful extensions: 806
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)