Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021908
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 128 3e-30
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 87 8e-18
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 77 7e-15
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 75 5e-14
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 72 3e-13
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 71 4e-13
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 68 4e-12
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 65 3e-11
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 54 7e-08
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 53 1e-07
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 41 5e-04
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 34 0.083
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 32 0.25
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 31 0.58
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 31 0.77
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 31 0.77
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 29 1.8
At2g16400.1 68415.m01877 homeodomain-containing protein 28 4.1
At3g50090.1 68416.m05476 exonuclease family protein contains exo... 27 9.5
At2g46640.1 68415.m05818 hypothetical protein and genefinder; e... 27 9.5
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 128 bits (309), Expect = 3e-30
Identities = 63/89 (70%), Positives = 73/89 (82%)
Frame = +3
Query: 255 LEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 434
LEVEHPA KVLVELA+LQD EVGDGTTSVVI+AAELLK A++LV+ KIHPTSIISGYRLA
Sbjct: 68 LEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLA 127
Query: 435 CKEAVKYIQDNLTVTVESLGRPSLITQPK 521
+E+ KYI++ L VE LG+ LI K
Sbjct: 128 MRESCKYIEEKLVTKVEKLGKVPLINCAK 156
Score = 86.6 bits (205), Expect = 1e-17
Identities = 43/64 (67%), Positives = 47/64 (73%)
Frame = +1
Query: 55 MSTIAAPLSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTND 234
MS A ++G R G VRTQNVM NIVK+SLGPVGLDKMLVDDIGDVT+TND
Sbjct: 1 MSISAQNPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITND 60
Query: 235 GATI 246
GATI
Sbjct: 61 GATI 64
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/30 (56%), Positives = 24/30 (80%)
Frame = +2
Query: 509 NTAKTTMSSKLIGADADFFSEMVVDAAQAI 598
N AKT+MSSKLI D+DFF+ +VV+A ++
Sbjct: 153 NCAKTSMSSKLISGDSDFFANLVVEAVLSV 182
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 87.0 bits (206), Expect = 8e-18
Identities = 36/63 (57%), Positives = 57/63 (90%)
Frame = +3
Query: 246 IENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 425
+++L +++PA KVLV+++++QD+EVGDGTTSVV++A ELL+ A++LV +KIHP +II+GY
Sbjct: 66 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGY 125
Query: 426 RLA 434
R+A
Sbjct: 126 RMA 128
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 GDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIG---DVTVTNDGATI*K 252
G+ R + + ++VKS+LGP G+DK+L G VTVTNDGATI K
Sbjct: 16 GERARMASFVGAMAISDLVKSTLGPKGMDKIL-QSTGRGHAVTVTNDGATILK 67
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 515 AKTTMSSKLIGADADFFSEMVVDA 586
A TT+ SK++ D + F+EM VDA
Sbjct: 158 AMTTLCSKILSQDKEHFAEMAVDA 181
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 77.4 bits (182), Expect = 7e-15
Identities = 34/82 (41%), Positives = 54/82 (65%)
Frame = +3
Query: 246 IENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 425
+ LE++HPA K+LV A+ Q EE+GDG + A ELL+NA+EL++ +HP+ IISGY
Sbjct: 73 VNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGY 132
Query: 426 RLACKEAVKYIQDNLTVTVESL 491
A +AV+ ++ + E++
Sbjct: 133 TKAVSKAVEILEQLVETGSETM 154
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1
Query: 106 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 246
D +N+ I ++SLGP G++KM+++ + + VTND ATI
Sbjct: 26 DEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFVTNDAATI 72
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 74.5 bits (175), Expect = 5e-14
Identities = 34/77 (44%), Positives = 54/77 (70%)
Frame = +3
Query: 255 LEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 434
L++ HPA K+LV++A+ QD EVGDGTT+VV++AAE LK A ++ +H ++I YR A
Sbjct: 72 LDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTA 131
Query: 435 CKEAVKYIQDNLTVTVE 485
A+ +++ L V++E
Sbjct: 132 STLAIAKVKE-LAVSIE 147
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = +1
Query: 97 SCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI*KI 255
S G N+ ++V+++LGP G+DK++ DD G VT++NDGATI K+
Sbjct: 19 SQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMKL 71
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +2
Query: 515 AKTTMSSKLIGADADFFSEMVVDAAQAI 598
A TT+SSKLIG + +FF+ MVVDA AI
Sbjct: 162 AATTLSSKLIGGEKEFFATMVVDAVMAI 189
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 72.1 bits (169), Expect = 3e-13
Identities = 32/88 (36%), Positives = 57/88 (64%)
Frame = +3
Query: 246 IENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 425
+ L+V HPA K ++EL++ QDEEVGDGTTSV+++A E+L A+ ++ HPT I Y
Sbjct: 65 LRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAY 124
Query: 426 RLACKEAVKYIQDNLTVTVESLGRPSLI 509
A ++++ + D + ++++ R ++
Sbjct: 125 IKALEDSIA-VLDKIAMSIDINDRSQVL 151
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 76 LSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 246
LS + R G V N+ +I++++LGP + KML+D G + VTNDG I
Sbjct: 8 LSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNAI 64
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 71.3 bits (167), Expect = 4e-13
Identities = 39/88 (44%), Positives = 51/88 (57%)
Frame = +3
Query: 246 IENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 425
+ +EV PA K+LVEL++ QD GDGTT+VV+IA LLK L+ IHPT I
Sbjct: 74 LNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSL 133
Query: 426 RLACKEAVKYIQDNLTVTVESLGRPSLI 509
AC +A+ I + V VE R SL+
Sbjct: 134 HKACGKAID-ILTAMAVPVELTDRDSLV 160
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +1
Query: 106 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 246
+ +R N+ + V++SLGP G+DKM+ G+V +TNDGATI
Sbjct: 27 EDIRFANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATI 73
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 68.1 bits (159), Expect = 4e-12
Identities = 29/72 (40%), Positives = 50/72 (69%)
Frame = +3
Query: 246 IENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 425
+E ++V++ K++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY
Sbjct: 74 LEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGY 133
Query: 426 RLACKEAVKYIQ 461
+A + AV++++
Sbjct: 134 EMASRVAVEHLE 145
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/52 (48%), Positives = 32/52 (61%)
Frame = +1
Query: 91 TRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 246
TR G + N+ I++SSLGP G+DKML GD+T+TNDGATI
Sbjct: 22 TRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATI 73
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 65.3 bits (152), Expect = 3e-11
Identities = 28/69 (40%), Positives = 48/69 (69%)
Frame = +3
Query: 255 LEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 434
++V++ K++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY +A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 435 CKEAVKYIQ 461
+ AV++++
Sbjct: 61 SRVAVEHLE 69
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 54.0 bits (124), Expect = 7e-08
Identities = 22/79 (27%), Positives = 46/79 (58%)
Frame = +3
Query: 246 IENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 425
++ +++++P ++ A QD+ GDGTTS VI EL+K ++ + +HP ++ G+
Sbjct: 63 LKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGF 122
Query: 426 RLACKEAVKYIQDNLTVTV 482
+A + ++++ DN V
Sbjct: 123 EIAKRATLQFL-DNFKTPV 140
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +1
Query: 151 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI*K 252
+++KS+LGP G KMLV GD+ +T DG T+ K
Sbjct: 31 DVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLK 64
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 53.2 bits (122), Expect = 1e-07
Identities = 21/79 (26%), Positives = 45/79 (56%)
Frame = +3
Query: 246 IENLEVEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 425
++ +++++P ++ A QD+ GDGTTS VI EL+K ++ + +HP ++ G+
Sbjct: 63 LKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGF 122
Query: 426 RLACKEAVKYIQDNLTVTV 482
+A + ++++ T V
Sbjct: 123 EIAKRATLQFLDTFKTPVV 141
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +1
Query: 151 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI*K 252
+++KS+LGP G KMLV GD+ +T DG T+ K
Sbjct: 31 DVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLK 64
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 41.1 bits (92), Expect = 5e-04
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +3
Query: 261 VEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 440
+E+ ++ E+A +E GDGTT+ +I+A E++K + + S+ +G K
Sbjct: 97 IENAGATLIQEVAIKMNESAGDGTTTAIILAREMIKAGSLAIAFGANAVSVKNGMNKTVK 156
Query: 441 EAVKYIQ 461
E V+ +Q
Sbjct: 157 ELVRVLQ 163
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 33.9 bits (74), Expect = 0.083
Identities = 17/67 (25%), Positives = 36/67 (53%)
Frame = +3
Query: 261 VEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 440
+E+ ++ E+A ++ GDGTT+ I+A E++K+ V + +P S+ G +
Sbjct: 110 MENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQ 169
Query: 441 EAVKYIQ 461
++ +Q
Sbjct: 170 GLIEELQ 176
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +3
Query: 261 VEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 440
VE+ K++ + A ++ GDGTT+ V++A L+ ++V +P I G K
Sbjct: 117 VENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTK 176
Query: 441 EAV 449
V
Sbjct: 177 ALV 179
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +3
Query: 261 VEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 440
VE+ K++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 117 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 176
Query: 441 EAVKYIQ 461
V ++
Sbjct: 177 ALVNELK 183
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 30.7 bits (66), Expect = 0.77
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 261 VEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 440
VE+ K++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 121 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 180
Query: 441 EAV 449
V
Sbjct: 181 ALV 183
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 30.7 bits (66), Expect = 0.77
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 261 VEHPAXKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 440
VE+ K++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 121 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 180
Query: 441 EAV 449
V
Sbjct: 181 ALV 183
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 246 IENLEVEHPAXKVLVELAQLQ----DEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSI 413
++ +E+E P V V+L + ++ GDG+T+ +I+A L+ +++ +P +
Sbjct: 96 LKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQV 155
Query: 414 ISGYRLACKEAV 449
G K V
Sbjct: 156 ARGIEKTTKALV 167
>At2g16400.1 68415.m01877 homeodomain-containing protein
Length = 482
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +2
Query: 389 DQDPSNKHYLRIPSRL*RSSQVHSG*PHSNSRVTWQAVSDNTAKTTMSSKLIGADADFFS 568
DQ+ ++++ + RL SSQ+ + ++N+ Q VS T +T +SK + A +
Sbjct: 71 DQEDNDRNRFPVMRRLGLSSQIETSRGNNNNEYATQVVSGFT-RTIHNSKYLKAAQELLD 129
Query: 569 EMV 577
E V
Sbjct: 130 ETV 132
>At3g50090.1 68416.m05476 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 322
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 57 VDYSCTFVCSRDKILRRPSENTKCNGSSGY 146
+D S F + LRRPS NT C GY
Sbjct: 162 IDTSLVFKYPNSRKLRRPSLNTLCMSVLGY 191
>At2g46640.1 68415.m05818 hypothetical protein and genefinder;
expression supported by MPSS
Length = 310
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 300 QLQDEEVGDGTTSVVIIAAELLKNADE 380
++ D+E G G V+I ++KN D+
Sbjct: 65 EMDDDECGSGDLDYVVIDGSIIKNVDQ 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,307,058
Number of Sequences: 28952
Number of extensions: 232768
Number of successful extensions: 591
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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