Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021907
         (570 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   0.79 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.2  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.2  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.2  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.2  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.2  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   5.6  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   5.6  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   5.6  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   5.6  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   5.6  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   5.6  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   5.6  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   5.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.4  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 445 ALASDAQASPTRQAARGANSPPRRPTPAHSGRPTLL*ERRL 323
           A A   +A+    AARGA        P H  RP L  +RR+
Sbjct: 276 APAPAVRAAGDAAAARGAARADGAGGPLHDHRPALAQQRRV 316


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +2

Query: 14  PILSDAVPILGSF 52
           P +SDA+P+LG++
Sbjct: 265 PQVSDAIPLLGTY 277


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +2

Query: 14  PILSDAVPILGSF 52
           P +SDA+P+LG++
Sbjct: 265 PQVSDAIPLLGTY 277


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +2

Query: 14  PILSDAVPILGSF 52
           P +SDA+P+LG++
Sbjct: 265 PQVSDAIPLLGTY 277


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 14  PILSDAVPILGSF 52
           P  SDAVP++G++
Sbjct: 265 PTTSDAVPLIGTY 277


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 14  PILSDAVPILGSF 52
           P  SDAVP++G++
Sbjct: 265 PTTSDAVPLIGTY 277


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -2

Query: 467 IWCAVALCSCKRRTGITNKASSSRREQPAS---SADTSALRTPNIALRAPPWSS 315
           +   V L +C R T   N+AS    ++P S   S        P+   +A P+S+
Sbjct: 246 VTATVQLSTCTRTTLKNNRASPYPMQRPKSASLSPPPHVYNPPDHIQQATPYSA 299


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 421 SPTRQAARGANSPPRRPTPAHSGRPTL 341
           SP + A +    P   P P H  +PT+
Sbjct: 44  SPPQVAPQYPQHPYAAPAPGHGLQPTM 70


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 421 SPTRQAARGANSPPRRPTPAHSGRPTL 341
           SP + A +    P   P P H  +PT+
Sbjct: 44  SPPQVAPQYPQHPYAAPAPGHGLQPTM 70


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 421 SPTRQAARGANSPPRRPTPAHSGRPTL 341
           SP + A +    P   P P H  +PT+
Sbjct: 44  SPPQVAPQYPQHPYAAPAPGHGLQPTM 70


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 421 SPTRQAARGANSPPRRPTPAHSGRPTL 341
           SP + A +    P   P P H  +PT+
Sbjct: 44  SPPQVAPQYPQHPYAAPAPGHGLQPTM 70


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 421 SPTRQAARGANSPPRRPTPAHSGRPTL 341
           SP + A +    P   P P H  +PT+
Sbjct: 44  SPPQVAPQYPQHPYAAPAPGHGLQPTM 70


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 421 SPTRQAARGANSPPRRPTPAHSGRPTL 341
           SP + A +    P   P P H  +PT+
Sbjct: 44  SPPQVAPQYPQHPYAAPAPGHGLQPTM 70


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 421 SPTRQAARGANSPPRRPTPAHSGRPTL 341
           SP + A +    P   P P H  +PT+
Sbjct: 44  SPPQVAPQYPQHPYAAPAPGHGLQPTM 70


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 421 SPTRQAARGANSPPRRPTPAHSGRPTL 341
           SP + A +    P   P P H  +PT+
Sbjct: 44  SPPQVAPQYPQHPYAAPAPGHGLQPTM 70


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 28   CCTYSRVILKKKSKSIEIVNTGPSRHSGTE 117
            CC  S  +L+  ++ + ++   PSR   T+
Sbjct: 976  CCGGSFPLLRSLNRGLGLIPDNPSREDCTK 1005


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 253 GGTAQTGGPHQRQSRLRAVQV 191
           GG      PHQ Q    AVQV
Sbjct: 16  GGVVSAEHPHQHQHYGAAVQV 36


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 253 GGTAQTGGPHQRQSRLRAVQV 191
           GG      PHQ Q    AVQV
Sbjct: 16  GGVVSAEHPHQHQHYGAAVQV 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,753
Number of Sequences: 336
Number of extensions: 2363
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)