Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021907
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    29   0.48 
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    26   4.5  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   4.5  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    25   5.9  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   7.8  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   7.8  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 21/86 (24%), Positives = 38/86 (44%)
 Frame = -1

Query: 474 LXXMVCGSVVLLQATHRHHQQGKQLAARTARLVGRHQRTQDAQHCFESAALE*RRLGERE 295
           L     GS++  +   R  ++  +  +   ++  R  R +D+QH FE    E +++    
Sbjct: 266 LIIQASGSIIQRRRKIRRLKRAIRKQSNHFQVGARRLRLKDSQHSFEQYIHEIKKIS--- 322

Query: 294 YFGRESVARVRGEAAGQRRQADRTSA 217
                   R+R E   QRRQ ++T A
Sbjct: 323 --NISDARRLRSELMVQRRQLEQTEA 346


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = +1

Query: 277 ALTPKILALAKSPLLQGGALKAMLGVLSALVSADEAGCSRRELLALLVMPVRRLQEHNAT 456
           A TP+ L L  +  L G  +    G+   L+  D+  C       +L     R  E + T
Sbjct: 175 ANTPRKLRLLIAHSLMGSII-GRNGLRIKLIQ-DKCSCRMIASKDMLPQSTERTVEIHGT 232

Query: 457 AHHXXQAFHSLSKCVAAGWWRG 522
             +   A   + KC+   W RG
Sbjct: 233 VDNLHAAIWEIGKCLIDDWERG 254


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 389 QPASSADTSALRTPNIALRAPPWSSGD 309
           +PA++ DT+    PN A   P  S+GD
Sbjct: 302 KPATTEDTNKPTAPNSAFTKPATSTGD 328


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 16/70 (22%), Positives = 31/70 (44%)
 Frame = -1

Query: 420 HQQGKQLAARTARLVGRHQRTQDAQHCFESAALE*RRLGEREYFGRESVARVRGEAAGQR 241
           H   K+L  +T  L       ++ Q CFE+  L+   +    +  ++++ ++R E    +
Sbjct: 44  HYAIKELKEKTYNLELYQSLFEEFQDCFENEQLDVEWVESVTFHRKQNLEQLRRELKAYK 103

Query: 240 RQADRTSARA 211
               R S RA
Sbjct: 104 NNLIRESIRA 113


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 385 GCSRRELLALLVMPVRRLQEHNATAHH 465
           G  RR L      P R   +HNA AH+
Sbjct: 270 GLHRRSLTNYFKFPHRNAHQHNAIAHN 296


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -2

Query: 425 GITNKASSSRREQPASSADTSALRTPNIALRAPPWSSGDLASA 297
           G++N A+SS++  P+S + +  L T  ++ +  P S+   ASA
Sbjct: 622 GVSN-AASSKQSFPSSPSISKKLETSRLSTKKLPGSTMKAASA 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,904
Number of Sequences: 5004
Number of extensions: 35513
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)