BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021907 (570 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_1087| Best HMM Match : HEAT (HMM E-Value=2.7) 33 0.22 SB_52895| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2 SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22) 29 2.0 SB_16639| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7 SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5 SB_36253| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42) 28 4.7 SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03) 28 4.7 SB_58455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2 SB_40809| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2 SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2 SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13) 27 8.2 >SB_1087| Best HMM Match : HEAT (HMM E-Value=2.7) Length = 219 Score = 32.7 bits (71), Expect = 0.22 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = +2 Query: 23 SDAVPILGSFLRKNQRA 73 SD++PIL SFLRKNQRA Sbjct: 126 SDSMPILASFLRKNQRA 142 Score = 24.2 bits (50), Expect(2) = 5.9 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 472 QAFHSLSKCVAAGWWRGXPEAGEAV 546 +A++S++KCVAA P GEAV Sbjct: 187 EAYYSIAKCVAA-LTMSCPVEGEAV 210 Score = 22.2 bits (45), Expect(2) = 5.9 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +1 Query: 325 GGALKAMLGVLSALVSADEAG 387 GGAL AML +++ LV++ G Sbjct: 159 GGALNAMLTLITELVNSGIKG 179 >SB_52895| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 185 Score = 30.3 bits (65), Expect = 1.2 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -2 Query: 146 KVQC*WHDYNSVPECLEGPVLTISMLF 66 ++ C WHD NSV + GP + S LF Sbjct: 60 EIPCSWHDKNSVLMAVRGPEIPCSWLF 86 >SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22) Length = 820 Score = 29.5 bits (63), Expect = 2.0 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -2 Query: 569 AASRRKPRTASPASGXPLHHPAATHFDNEW 480 + RR PR AS ++G L H +FD +W Sbjct: 424 SGKRRAPRNASYSTGSVLPHRDINNFDTDW 453 >SB_16639| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 358 Score = 29.1 bits (62), Expect = 2.7 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -2 Query: 461 CAVALCSCKRRTGITNKASSS 399 C ALC C+RR G TN S S Sbjct: 322 CFFALCCCRRRNGNTNIGSDS 342 >SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 684 Score = 28.7 bits (61), Expect = 3.5 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -2 Query: 536 PASGXPLHHPAATHFDNEWNACXIWCAVALCSCKR 432 P+S P AA F W+AC C+ +C+C+R Sbjct: 162 PSSNIPAGTLAALGFRYPWSAC---CSCLVCTCRR 193 >SB_36253| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42) Length = 481 Score = 28.3 bits (60), Expect = 4.7 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = -2 Query: 461 CAVALCSCKRRTGITNKASSSRREQPASSADTSALRTPNIAL 336 C V C C+RR T S RE +SSA P I+L Sbjct: 369 CGVCCCCCRRR--YTGNRVDSFREASSSSATLQPAPKPRISL 408 >SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03) Length = 1832 Score = 28.3 bits (60), Expect = 4.7 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Frame = -1 Query: 441 LQATHR---HHQQGKQLAARTARLVGRHQRTQDAQHCFESAALE*RRLGEREYFGRESVA 271 LQAT R QQ L +LVG +Q+ Q +H SAAL +E+F ++S + Sbjct: 604 LQATQRGELSQQQIDYLNRMHIQLVGEYQQAQMLEHYQASAALSEEMKLVQEHFQKQSAS 663 >SB_58455| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 51 Score = 27.9 bits (59), Expect = 6.2 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = -2 Query: 416 NKASSSRREQPASSADTSALRTPN 345 +++S E P SSAD+SA++ PN Sbjct: 24 HQSSKESNEGPVSSADSSAIKDPN 47 >SB_40809| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 367 Score = 27.9 bits (59), Expect = 6.2 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +2 Query: 143 LLSKVLMEVPALVCEQDLHCAQTALALVRSACLRCPAASPRTR 271 + +K L+ AL+C + L CA+ AL+R+ L C A R + Sbjct: 239 ICAKALIRAKALICAKALICAK---ALIRAKALICAKALIRAK 278 Score = 27.5 bits (58), Expect = 8.2 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = +2 Query: 143 LLSKVLMEVPALVCEQDLHCAQT---ALALVRSACLRCPAASPRTRATL 280 + +K L+ AL+C + L CA+ A AL+ + L C A R +A + Sbjct: 59 ICAKALIRAKALICAKALICAKALIRAKALICAKALICAKALIRAKALI 107 >SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 336 Score = 27.9 bits (59), Expect = 6.2 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +3 Query: 249 PPPHRGRALRSHAQNTRARQVAATPRRRSQSNVGRPECAGVGRRGGLFAPR 401 P HR RS +++ R R+ + +PRRR +S P R +PR Sbjct: 216 PAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPR 266 >SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13) Length = 725 Score = 27.5 bits (58), Expect = 8.2 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = -2 Query: 410 ASSSRREQPASSADTSALRTPNIALRAPP-WSSGDLASAS 294 +S+ +R+QPA S+++ + P + R PP WSS S S Sbjct: 180 SSAIQRKQPACSSNSCSPGDPLVLERPPPRWSSNSPYSES 219 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,695,155 Number of Sequences: 59808 Number of extensions: 334955 Number of successful extensions: 1294 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1149 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1284 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1349364063 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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