Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021907
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1087| Best HMM Match : HEAT (HMM E-Value=2.7)                       33   0.22 
SB_52895| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)                29   2.0  
SB_16639| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_36253| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)             28   4.7  
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     28   4.7  
SB_58455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_40809| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13)                  27   8.2  

>SB_1087| Best HMM Match : HEAT (HMM E-Value=2.7)
          Length = 219

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +2

Query: 23  SDAVPILGSFLRKNQRA 73
           SD++PIL SFLRKNQRA
Sbjct: 126 SDSMPILASFLRKNQRA 142



 Score = 24.2 bits (50), Expect(2) = 5.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 472 QAFHSLSKCVAAGWWRGXPEAGEAV 546
           +A++S++KCVAA      P  GEAV
Sbjct: 187 EAYYSIAKCVAA-LTMSCPVEGEAV 210



 Score = 22.2 bits (45), Expect(2) = 5.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 325 GGALKAMLGVLSALVSADEAG 387
           GGAL AML +++ LV++   G
Sbjct: 159 GGALNAMLTLITELVNSGIKG 179


>SB_52895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 146 KVQC*WHDYNSVPECLEGPVLTISMLF 66
           ++ C WHD NSV   + GP +  S LF
Sbjct: 60  EIPCSWHDKNSVLMAVRGPEIPCSWLF 86


>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
          Length = 820

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 569 AASRRKPRTASPASGXPLHHPAATHFDNEW 480
           +  RR PR AS ++G  L H    +FD +W
Sbjct: 424 SGKRRAPRNASYSTGSVLPHRDINNFDTDW 453


>SB_16639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 461 CAVALCSCKRRTGITNKASSS 399
           C  ALC C+RR G TN  S S
Sbjct: 322 CFFALCCCRRRNGNTNIGSDS 342


>SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 536 PASGXPLHHPAATHFDNEWNACXIWCAVALCSCKR 432
           P+S  P    AA  F   W+AC   C+  +C+C+R
Sbjct: 162 PSSNIPAGTLAALGFRYPWSAC---CSCLVCTCRR 193


>SB_36253| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
          Length = 481

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -2

Query: 461 CAVALCSCKRRTGITNKASSSRREQPASSADTSALRTPNIAL 336
           C V  C C+RR   T     S RE  +SSA       P I+L
Sbjct: 369 CGVCCCCCRRR--YTGNRVDSFREASSSSATLQPAPKPRISL 408


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -1

Query: 441 LQATHR---HHQQGKQLAARTARLVGRHQRTQDAQHCFESAALE*RRLGEREYFGRESVA 271
           LQAT R     QQ   L     +LVG +Q+ Q  +H   SAAL       +E+F ++S +
Sbjct: 604 LQATQRGELSQQQIDYLNRMHIQLVGEYQQAQMLEHYQASAALSEEMKLVQEHFQKQSAS 663


>SB_58455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 51

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 416 NKASSSRREQPASSADTSALRTPN 345
           +++S    E P SSAD+SA++ PN
Sbjct: 24  HQSSKESNEGPVSSADSSAIKDPN 47


>SB_40809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 143 LLSKVLMEVPALVCEQDLHCAQTALALVRSACLRCPAASPRTR 271
           + +K L+   AL+C + L CA+   AL+R+  L C  A  R +
Sbjct: 239 ICAKALIRAKALICAKALICAK---ALIRAKALICAKALIRAK 278



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 143 LLSKVLMEVPALVCEQDLHCAQT---ALALVRSACLRCPAASPRTRATL 280
           + +K L+   AL+C + L CA+    A AL+ +  L C  A  R +A +
Sbjct: 59  ICAKALIRAKALICAKALICAKALIRAKALICAKALICAKALIRAKALI 107


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 249 PPPHRGRALRSHAQNTRARQVAATPRRRSQSNVGRPECAGVGRRGGLFAPR 401
           P  HR    RS +++ R R+ + +PRRR +S    P       R    +PR
Sbjct: 216 PAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPR 266


>SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13)
          Length = 725

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 410 ASSSRREQPASSADTSALRTPNIALRAPP-WSSGDLASAS 294
           +S+ +R+QPA S+++ +   P +  R PP WSS    S S
Sbjct: 180 SSAIQRKQPACSSNSCSPGDPLVLERPPPRWSSNSPYSES 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,695,155
Number of Sequences: 59808
Number of extensions: 334955
Number of successful extensions: 1294
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)