Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021907
(570 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical p... 30 1.3
AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical ... 30 1.3
Z77658-2|CAB01156.1| 457|Caenorhabditis elegans Hypothetical pr... 28 4.1
U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z77665-7|CAI46591.1| 360|Caenorhabditis elegans Hypothetical pr... 28 5.4
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 5.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 5.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 5.4
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr... 27 7.2
U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein. 27 7.2
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 27 7.2
Z92834-4|CAB07387.1| 117|Caenorhabditis elegans Hypothetical pr... 27 9.5
>Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical
protein Y102A5A.1 protein.
Length = 1274
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 292 ILALAKSPLLQGGALKAMLGVLSALVSAD 378
I+ L SPL+QG AL ++L + +A+V D
Sbjct: 765 IIRLLTSPLIQGLALNSLLNLFTAIVKTD 793
>AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical
protein Y102A5A.1 protein.
Length = 1274
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 292 ILALAKSPLLQGGALKAMLGVLSALVSAD 378
I+ L SPL+QG AL ++L + +A+V D
Sbjct: 765 IIRLLTSPLIQGLALNSLLNLFTAIVKTD 793
>Z77658-2|CAB01156.1| 457|Caenorhabditis elegans Hypothetical
protein F14D7.2 protein.
Length = 457
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Frame = -2
Query: 434 RRTGITNKASSSR------REQPASSADTSALRTPNIALRAPPWSSGDLASAS 294
RR ++N++ SS ++QP +S+ + R+P + APP SS ASAS
Sbjct: 44 RRGMMSNESESSAHDDKVIKKQPETSSSSPEHRSPRRSKSAPPSSSNPPASAS 96
>U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical
protein K09E3.1 protein.
Length = 675
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 442 LASDAQASPTRQAARGANSPPRRPTPAHSGRPT 344
L S SP R+ P PTPA+ G+PT
Sbjct: 3 LGSSRSPSPGRRRHASEGGTPIPPTPANCGKPT 35
>Z77665-7|CAI46591.1| 360|Caenorhabditis elegans Hypothetical
protein K02E11.10 protein.
Length = 360
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 154 GANGGAGLGVRAGPALRADGSGAGAVRLSAL 246
G GG G G +A PAL+ G GA A L
Sbjct: 131 GLGGGPGGGYQAAPALQLPGLGAPAPAFGGL 161
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 246 VPPPHRGRALRSHAQNTRARQVAATPRRRSQS 341
+ PP +GR+L A+ Q A PRR QS
Sbjct: 2348 IAPPRKGRSLSRDAERLLEIQPRAPPRRSRQS 2379
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 246 VPPPHRGRALRSHAQNTRARQVAATPRRRSQS 341
+ PP +GR+L A+ Q A PRR QS
Sbjct: 2348 IAPPRKGRSLSRDAERLLEIQPRAPPRRSRQS 2379
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 246 VPPPHRGRALRSHAQNTRARQVAATPRRRSQS 341
+ PP +GR+L A+ Q A PRR QS
Sbjct: 2348 IAPPRKGRSLSRDAERLLEIQPRAPPRRSRQS 2379
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical protein
R08B4.1b protein.
Length = 1160
Score = 27.5 bits (58), Expect = 7.2
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 154 GANGGAGLGVRAGPALRA-DGSGAGAVRLSALSRRLTADARYALTPKILALAKSPLLQGG 330
GA G G G G A +G+GAGA SA + A A+ A + A A + Q
Sbjct: 866 GAGNGNGAGAGNGNGAGAGNGNGAGAGDASAAA--AAAQAQAAAAAQAQAAAAAAAQQAA 923
Query: 331 ALKAMLGVLSALVSADEAGCSRRELLA 411
A A A +A A L+A
Sbjct: 924 AAAAAANAQQAAAAAAAAANPLSALVA 950
>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical protein
R08B4.1a protein.
Length = 1137
Score = 27.5 bits (58), Expect = 7.2
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 154 GANGGAGLGVRAGPALRA-DGSGAGAVRLSALSRRLTADARYALTPKILALAKSPLLQGG 330
GA G G G G A +G+GAGA SA + A A+ A + A A + Q
Sbjct: 843 GAGNGNGAGAGNGNGAGAGNGNGAGAGDASAAA--AAAQAQAAAAAQAQAAAAAAAQQAA 900
Query: 331 ALKAMLGVLSALVSADEAGCSRRELLA 411
A A A +A A L+A
Sbjct: 901 AAAAAANAQQAAAAAAAAANPLSALVA 927
>U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein.
Length = 790
Score = 27.5 bits (58), Expect = 7.2
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +1
Query: 154 GANGGAGLGVRAGPALRA-DGSGAGAVRLSALSRRLTADARYALTPKILALAKSPLLQGG 330
GA G G G G A +G+GAGA SA + A A+ A + A A + Q
Sbjct: 496 GAGNGNGAGAGNGNGAGAGNGNGAGAGDASAAA--AAAQAQAAAAAQAQAAAAAAAQQAA 553
Query: 331 ALKAMLGVLSALVSADEAGCSRRELLA 411
A A A +A A L+A
Sbjct: 554 AAAAAANAQQAAAAAAAAANPLSALVA 580
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 154 GANGGAGLGVRAGPALRADGSGAGAVRLSALSRRLTADA 270
G GG G G AG A G G GA + + + A A
Sbjct: 362 GGGGGGGGGAAAGGGYNAGGGGGGAPQAAPAPQAAPAPA 400
>Z92834-4|CAB07387.1| 117|Caenorhabditis elegans Hypothetical
protein F39B2.6 protein.
Length = 117
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 448 CALASDAQASPTRQAARGANSPPRRPTPAHSGRP 347
CA+ S + +R+A R N PPR A + RP
Sbjct: 77 CAIHSKVVRNRSREARRDRNPPPRFGQRAAAARP 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,869,079
Number of Sequences: 27780
Number of extensions: 235178
Number of successful extensions: 869
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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