Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021907
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02560.1 68415.m00195 TIP120 protein, putative similar to TBP...    35   0.044
At2g04080.1 68415.m00391 MATE efflux family protein similar to h...    30   1.2  
At2g04066.1 68415.m00389 MATE efflux protein-related similar to ...    30   1.2  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    27   8.8  

>At2g02560.1 68415.m00195 TIP120 protein, putative similar to
           TBP-interacting protein TIP120 GI:1799570 from [Rattus
           norvegicus]
          Length = 1219

 Score = 34.7 bits (76), Expect = 0.044
 Identities = 28/86 (32%), Positives = 40/86 (46%)
 Frame = +1

Query: 247 SRRLTADARYALTPKILALAKSPLLQGGALKAMLGVLSALVSADEAGCSRRELLALLVMP 426
           S  ++   R  + P+ L L KSPLLQG AL  +     ALV    A  S   LL  L+  
Sbjct: 719 SENISLAVRNKVLPQALTLVKSPLLQGQALLDLQKFFEALVY--HANTSFYTLLESLLSC 776

Query: 427 VRRLQEHNATAHHXXQAFHSLSKCVA 504
            +   +         QA +S+++CVA
Sbjct: 777 AKPSPQSGGV---PKQALYSIAQCVA 799


>At2g04080.1 68415.m00391 MATE efflux family protein similar to
           hypothetical protein GB:AAC27412; contains Pfam profile
           PF01554: Uncharacterized membrane protein family
          Length = 476

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 494 FDNEWNACXIWCAVALCSCKRRTGITNKASSSRREQPASSADTSALRTPN 345
           F  EWN   +WC V + S  + T +    +S   ++ A  A    + T N
Sbjct: 424 FSREWNGKGLWCGVMVGSAVQATLLAIVTASMNWKEQAEKARKRIISTEN 473


>At2g04066.1 68415.m00389 MATE efflux protein-related similar to
           multidrug secondary transporter-like TRANSPARENT TESTA
           12 protein (Swiss-Prot:Q9LYT3) [Arabidopsis thaliana];
           supported by tandem duplication of  (GI:4734008)
           (TIGR_Ath1:At2g04070) [Arabidopsis thaliana]
          Length = 171

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 494 FDNEWNACXIWCAVALCSCKRRTGITNKASSSRREQPASSADTSALRTPN 345
           F  EWN   +WC V + S  + T +    +S   ++ A  A    + T N
Sbjct: 119 FSREWNGKGLWCGVMVGSAVQATLLAIVTASMNWKEQAEKARKRIISTKN 168


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 442 LASDAQASPTRQAARGANSPPRRPTPAHSGRPTLL*ERRLGVA 314
           L     + P    A+G+N+PP  P PA  GR +L   R  GV+
Sbjct: 745 LGRGTSSGPPPLGAKGSNAPP-PPPPAGRGRASLGLGRGRGVS 786


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,227,357
Number of Sequences: 28952
Number of extensions: 218729
Number of successful extensions: 848
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)