Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021906X
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   130   9e-32
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    80   2e-16
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    79   5e-16
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    77   1e-15
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    29   0.43 
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   1.7  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        26   3.0  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   4.0  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   4.0  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   4.0  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   5.3  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  130 bits (315), Expect = 9e-32
 Identities = 62/93 (66%), Positives = 70/93 (75%)
 Frame = +2

Query: 248 LGAGTMDSVRSGPFGQXFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESC 427
           L  GTMD+V+SG FG  FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVVR+EAE+C
Sbjct: 68  LEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEAC 127

Query: 428 DCLQGFQLTHSXXRRHRFRYGHPPHLQIREEYP 526
           D LQGFQLTHS         G     +IREEYP
Sbjct: 128 DALQGFQLTHSLGGGTGSGMGTLLLSKIREEYP 160



 Score =  126 bits (303), Expect = 3e-30
 Identities = 53/70 (75%), Positives = 61/70 (87%)
 Frame = +3

Query: 48  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 227
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 228 PRAILVDLEP 257
           PRA+LVDLEP
Sbjct: 61  PRAVLVDLEP 70


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 79.8 bits (188), Expect = 2e-16
 Identities = 33/69 (47%), Positives = 50/69 (72%)
 Frame = +3

Query: 51  REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 230
           REI+ +QAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 231 RAILVDLEP 257
           RAIL+DLEP
Sbjct: 63  RAILIDLEP 71



 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
 Frame = +2

Query: 263 MDSVRSGPFGQXFRPDNFVFGQSG--AGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCL 436
           ++++ S  +G  + P+N +  ++G  AGNNWA G Y+    + + ++D++ +EA+  D L
Sbjct: 74  VNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSL 132

Query: 437 QGFQLTHS 460
           +GF L HS
Sbjct: 133 EGFSLLHS 140


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 78.6 bits (185), Expect = 5e-16
 Identities = 33/71 (46%), Positives = 48/71 (67%)
 Frame = +2

Query: 248 LGAGTMDSVRSGPFGQXFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESC 427
           L    +D VR+GP+   F P+  V G+  A NN+A+GHYT G E++DSVL+ +R+ A++C
Sbjct: 74  LEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNC 133

Query: 428 DCLQGFQLTHS 460
             LQGF + HS
Sbjct: 134 SGLQGFLVFHS 144



 Score = 61.3 bits (142), Expect = 9e-11
 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
 Frame = +3

Query: 48  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 209
           MRE++ +  GQ G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 210 SGGKYVPRAILVDLEP 257
             GK+VPR+I VDLEP
Sbjct: 61  GQGKFVPRSIYVDLEP 76


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 77.4 bits (182), Expect = 1e-15
 Identities = 33/71 (46%), Positives = 46/71 (64%)
 Frame = +2

Query: 248 LGAGTMDSVRSGPFGQXFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESC 427
           L    +D VR+GP+   F P+  + G+  A NN+A+GHYT G ELVD V D +R+ A++C
Sbjct: 70  LEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNC 129

Query: 428 DCLQGFQLTHS 460
             LQGF + HS
Sbjct: 130 SGLQGFLVFHS 140



 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
 Frame = +3

Query: 48  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGK 221
           MREI+ I  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 222 YVPRAILVDLEP 257
           YVPR+I VDLEP
Sbjct: 61  YVPRSIYVDLEP 72


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 29.1 bits (62), Expect = 0.43
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 388 IDELSTLRVVSLGPVVAGAGLSEDEVVRTEXLSERSRADRVHGAGSKSTRMARG 227
           ++++S   V+ +G    G G++ D   R   +    + D      SKST+MA G
Sbjct: 62  VEDISKFDVLIIGGGATGTGVAVDASTRGLNVCLLEKTDFASETSSKSTKMAHG 115


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 87  NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 188
           N++G    E+++++  +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 350 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 439
           A+GH   G ELV +  D +RK++E+   L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 302  RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 433
            RP   +F     G++   G   +  E  D ++ +  +  ESCDC
Sbjct: 955  RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 281 GPFGQXFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 382
           GP+G  F P  F+F  +G    NW+   Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 290 RKVQSGQSPWCRLQVDEDGAGHVLAAGGF 204
           R +Q  QSP+C+L+  ++G   ++   GF
Sbjct: 344 RVLQVTQSPFCKLKTPDNGVPAIVLRTGF 372


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -2

Query: 284 VQSGQSPWCRLQVDEDGAGHVLAAGGFIVVYIDALQLQVRVPMVGTG 144
           +Q+G     +L ++ DG G+V+      + Y D + L V++ ++ TG
Sbjct: 321 LQTGDGDLLKLTIEHDGQGNVVE---LRLKYFDTVPLAVQLNILKTG 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,693
Number of Sequences: 5004
Number of extensions: 34122
Number of successful extensions: 106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)