Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021905X
(393 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 0.19
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 27 0.79
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 27 0.79
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha... 25 3.2
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 3.2
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 4.2
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 5.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 5.5
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ... 24 9.7
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo... 24 9.7
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.19
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Frame = +1
Query: 49 QHHPPFISPRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCAYHGFH 228
+HH SPR GS S + H S S P+ + + + +S+ P + H +
Sbjct: 114 RHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSR-HPSSRSRHRYD 172
Query: 229 QFSR----HSRHPR 258
+SR SRH R
Sbjct: 173 DYSRSPPYSSRHSR 186
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 27.5 bits (58), Expect = 0.79
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +1
Query: 58 PPFISPRRHNGSPSGNRHQQFPS---QASTLPISGKFQAHDINNQQSQLVPGFCAYHGFH 228
PPF++ NG+ GN ++ PS A+ P + N + LV YH F
Sbjct: 53 PPFVNTTAPNGTCLGNYNEYLPSGYYNATDRPKIHFTPSSGFMNDPNGLVYTGGVYHMFF 112
Query: 229 QFS 237
Q+S
Sbjct: 113 QYS 115
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 27.5 bits (58), Expect = 0.79
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 37 WLSRQHHPPFISPRRH-NGSPS 99
W +QH F+SP +H +G+PS
Sbjct: 449 WCLKQHDSSFVSPNKHLDGNPS 470
>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
Exg3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 3.2
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +1
Query: 145 ISGKFQAHDINNQQSQLVPGFCAYHGFHQFSRHSRHPRDAITAPLVETAISN 300
+SG +AH I+ + + ++ G FS +H +++ PL ++ N
Sbjct: 45 VSGNVKAHGIDKARENFEAHWKSWIGIEDFSYMKQHLVNSVRIPLGYWSLGN 96
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.4 bits (53), Expect = 3.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 2 KSQLVPGFCA*HGFHANTIHRLYHRDAITAPLVETAIS 115
KS+L+P C H F +N + Y T P ET S
Sbjct: 648 KSKLIPN-CG-HAFCSNCMEPFYEHKTSTCPQCETPFS 683
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 4.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 163 AHDINNQQSQLVPGFCAYHGF 225
A + NN +PG AYHGF
Sbjct: 338 ATECNNDCGYYLPGIPAYHGF 358
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 214 YHGFHQFSRHSRHPRDAITAPLVETAISNFRHKLQ 318
YHG + F SR+P + V++A+++ + +Q
Sbjct: 736 YHGINVFGNESRNPSVIVNVEDVKSALTSEQIAMQ 770
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 250 HPRDAITAPLVETAISNFRHK 312
+P A P+ E +S+FRHK
Sbjct: 1096 NPERAFILPIFEVLLSDFRHK 1116
>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 23.8 bits (49), Expect = 9.7
Identities = 7/24 (29%), Positives = 15/24 (62%)
Frame = +1
Query: 169 DINNQQSQLVPGFCAYHGFHQFSR 240
++N+ + + PGFC F+ ++R
Sbjct: 228 EVNDMKYAVAPGFCNSDDFYTYAR 251
>SPAC8E11.01c
||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 23.8 bits (49), Expect = 9.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 56 IHRLYHRDAITAPLVETAISNF 121
+H LY+ D++ APL+ + F
Sbjct: 333 LHHLYYPDSLPAPLLLNRVCEF 354
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,108
Number of Sequences: 5004
Number of extensions: 33286
Number of successful extensions: 95
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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