Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021905X
(393 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 30 0.58
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 30 0.58
03_06_0381 - 33524696-33524743,33524833-33524910,33525020-335252... 29 1.3
08_02_0335 - 15880426-15880509,15881344-15881444,15882310-158823... 28 3.1
06_03_1452 - 30255093-30255460,30255593-30255777,30255866-302562... 27 4.1
06_02_0336 + 14613185-14613610,14615746-14615892,14615976-14616302 27 5.4
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136... 27 5.4
05_03_0159 + 9040426-9040550,9042491-9042569,9042710-9042769,904... 27 5.4
04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140 27 5.4
02_02_0741 + 13590883-13591582,13591955-13592250 27 7.1
08_02_0842 + 21754800-21754932,21755513-21756267 26 9.4
08_02_0582 + 18993816-18993890,18994050-18994446,18995645-189957... 26 9.4
02_01_0424 - 3097245-3099377 26 9.4
>03_06_0353 -
33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 30.3 bits (65), Expect = 0.58
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 41 FHANTIHRLYHRDAITAPLVETAISNFRHK 130
+H N H L HR A+ AP A + +H+
Sbjct: 95 YHQNPTHNLQHRAAVPAPAAPAAAPSIQHR 124
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 30.3 bits (65), Expect = 0.58
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = +1
Query: 85 NGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCAYHGFHQFSRHSRHPRDA 264
+G+ +G H++ S A TL S D NN VP +CA F + + P
Sbjct: 106 DGAAAGEEHEKPASFAKTLTQS------DANNGGGFSVPRYCAETIFPRLDYAADPPVQT 159
Query: 265 ITAPLVETAISNFRH 309
+ A V NFRH
Sbjct: 160 VVAKDVHGVAWNFRH 174
>03_06_0381 -
33524696-33524743,33524833-33524910,33525020-33525293,
33525385-33525617
Length = 210
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 28 RLAWLSRQHHPPFISPRRHNGSPSGNRHQQFPSQASTLPISG 153
R + L+R+ PF+S RH+ S S + + + ++ S P G
Sbjct: 71 RPSTLNRRKTEPFVSDNRHSMSLSPEKDRYYSTRGSPFPFEG 112
>08_02_0335 -
15880426-15880509,15881344-15881444,15882310-15882396,
15882495-15882510
Length = 95
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 88 GSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPG-FCAYHGFHQFSRHSRHPRDA 264
GS + RH + + LP S F NNQQ G +GF F+ ++HPR
Sbjct: 16 GSGASKRHADIHHEVTNLPGSKGFTPSRNNNQQPYNGQGAHSLTYGFKTFA--TKHPRKY 73
Query: 265 I 267
I
Sbjct: 74 I 74
>06_03_1452 -
30255093-30255460,30255593-30255777,30255866-30256281,
30256726-30256934,30257542-30257700,30257792-30257810
Length = 451
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 52 HHPPFISPRRHNGSPSGNRHQQFPSQASTLPISGKFQ 162
H PF PRR+ P H+ FP ++ I GK +
Sbjct: 221 HRLPFDEPRRNGKVPKILTHRLFPQAWYSIWIDGKME 257
>06_02_0336 + 14613185-14613610,14615746-14615892,14615976-14616302
Length = 299
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 217 HGFHQFSRHSRHPRDAITAPLVETAISNFRHKLQLYPYQVNSKL 348
HG H F RH AP ++ I++F +L +YP N L
Sbjct: 126 HGLHHFLRHK--------APNLDGQITDFIEELSMYPIHSNGLL 161
>06_01_0173 -
1364219-1364836,1364941-1365123,1365215-1365470,
1365551-1366120,1367066-1367178,1367344-1367816,
1367906-1367984
Length = 763
Score = 27.1 bits (57), Expect = 5.4
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +1
Query: 61 PFISPRRHNGSPSGNRHQQFPSQ--ASTLPISGKFQAHDINNQQSQLVPGFCAYHGF-HQ 231
PF+ P GSP + P + A T+P+S + + + + L CA F +Q
Sbjct: 25 PFLRPSTSRGSPELEEEENSPIEQVALTVPVSDEPETPVLTFRMWVLGTASCAVLSFLNQ 84
Query: 232 FSRHSRHPRDAITAPLVETAI 294
F + + P ITA + A+
Sbjct: 85 FFWYRKEPL-TITAISAQIAV 104
>05_03_0159 +
9040426-9040550,9042491-9042569,9042710-9042769,
9043050-9043121
Length = 111
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 4 KSACPWLLRLAWLSRQHHPPFISPRRHNGSPSG 102
++ PWL W R+ H P PR+ + +G
Sbjct: 4 RTPAPWLALGTWQERKEHEPRERPRKEHEHSAG 36
>04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140
Length = 695
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 4 KSACPWLLRL-AWLSRQHHPPFISPRRHNGSP 96
K CPWL+ L + + H P F PR+ +P
Sbjct: 372 KRVCPWLVELVSSMPNLHLPSFSPPRKKPRNP 403
>02_02_0741 + 13590883-13591582,13591955-13592250
Length = 331
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 43 SRQHHPPFISPRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQS 189
SRQ HPP + + +P+ ++ Q+FP A + + ++ I +S
Sbjct: 34 SRQCHPPPVRDQMPARNPNQSQSQEFPISAPKTHVKMRSRSPKITTAKS 82
>08_02_0842 + 21754800-21754932,21755513-21756267
Length = 295
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Frame = -2
Query: 110 WRFPLGEPLWRLGDINGGWC-WRESHA 33
W G WR G WC W+E A
Sbjct: 175 WHLCAGSARWRRGRAGAAWCGWQEDGA 201
>08_02_0582 +
18993816-18993890,18994050-18994446,18995645-18995748,
18995863-18996004,18996118-18996237,18996341-18996465,
18996903-18997061,18997161-18997323,18997420-18997545,
18997628-18997711,18997761-18998173,18998199-18998273,
18998463-18998663,18998862-18998971,18999072-18999156,
18999365-18999493,18999596-18999701,18999825-18999913,
19000064-19000366
Length = 1001
Score = 26.2 bits (55), Expect = 9.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 190 QLVPGFCAYHGFHQFSRHS 246
+LVPGF Y GF++ + ++
Sbjct: 526 ELVPGFALYRGFYELAEYA 544
>02_01_0424 - 3097245-3099377
Length = 710
Score = 26.2 bits (55), Expect = 9.4
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +2
Query: 53 TIHRLYHRDAITAPLVETAISNFRHKLQLYPYQVNSKLMT*TTNKVSLSLASALIMAFTN 232
++H Y+ A T P SN + LQL + + +L TN SL+ S +FTN
Sbjct: 346 SLHVSYNSFAGTIPESVYTCSNL-NALQLSFNKFHGQLSFRITNLKSLTYLSLAENSFTN 404
Query: 233 LVDTLAI 253
+ +TL I
Sbjct: 405 ISNTLQI 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,660,626
Number of Sequences: 37544
Number of extensions: 253559
Number of successful extensions: 676
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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