Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021905X
         (393 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.3  
SB_53226| Best HMM Match : ResIII (HMM E-Value=0.45)                   27   5.4  
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)                 27   7.2  
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               27   7.2  
SB_11749| Best HMM Match : UPF0254 (HMM E-Value=0.71)                  27   7.2  
SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)              27   7.2  
SB_4374| Best HMM Match : GCS (HMM E-Value=6.2)                        27   7.2  
SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)             26   9.5  
SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)            26   9.5  

>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 25/88 (28%), Positives = 35/88 (39%)
 Frame = +1

Query: 73   PRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCAYHGFHQFSRHSRH 252
            PR      SG+      S    +P SGK Q  D  N+Q    PGF        FS  S+ 
Sbjct: 1198 PRGEGEEKSGSSGSSMESSPQGMPASGKTQITDNPNKQ----PGFPG-----GFSSASQF 1248

Query: 253  PRDAITAPLVETAISNFRHKLQLYPYQV 336
            P    ++P   T  ++  +K Q  P  +
Sbjct: 1249 PYSIASSPWQNTEPTDSLNKTQANPSSI 1276


>SB_53226| Best HMM Match : ResIII (HMM E-Value=0.45)
          Length = 880

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 46  RQHHPPFISPRRHNGSPSGNRHQQFPSQASTL 141
           +Q  P  + P  HN    G  H +FPS  +TL
Sbjct: 2   QQEGPESLDPETHNSLFIGGAHLRFPSVDATL 33


>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1615

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 93  P*WKPPSAISVTSFNFT 143
           P W+PP A+ V +F+FT
Sbjct: 52  PDWQPPFAVDVENFHFT 68



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 275 P*WKPPSAISVTSFNFT 325
           P W+PP A+ V +F+FT
Sbjct: 52  PDWQPPFAVDVENFHFT 68


>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
          Length = 1683

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
 Frame = +1

Query: 10   ACPWLLRLAWLSRQHHPPFI------SPRRHNGSPSGNR-HQQFPSQASTLP 144
            A PWL     L+R HHPPF       +  R N  P   R H Q P     LP
Sbjct: 1513 AGPWLYAPP-LARLHHPPFALAKAIKAEERENAPPIPPRAHTQEPEVPPALP 1563


>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -3

Query: 283  PLGEPLWRLGDGESVD*IGESHDKRRSQGQA--DFVGCLCHELG 158
            P+  PL  L   E +       D   + G+   D +GC+CHE G
Sbjct: 1060 PVDYPLEELDMREFMQSANSPRDSSLTNGEYVYDLIGCICHEGG 1103


>SB_11749| Best HMM Match : UPF0254 (HMM E-Value=0.71)
          Length = 405

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 22  LLRLAWLSRQHHPPFISPRRHNGSPSGNRHQ 114
           +LR+ W S        +PRR + + SGN H+
Sbjct: 181 ILRIGWKSSARCKTHATPRRLSNASSGNCHE 211


>SB_10171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +1

Query: 55  HPPFISPRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINN-QQSQLVPGFCAYHGFHQ 231
           H    +  RHN  P+  RH   P+      +    + + +NN  +   +P    ++    
Sbjct: 2   HNSLPNTTRHNSLPNTTRHNSLPNTTRHNSLPNTTRHNSLNNTTRHNSLPNTTRHNSLPN 61

Query: 232 FSRHSRHP 255
            +RH+  P
Sbjct: 62  TTRHNSLP 69


>SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 38  GFHANTIHRLYHRDAITAPLVETAISNFRHKLQL 139
           G H    H +YH   +TA  + + +S   H+L L
Sbjct: 645 GLHRKISHEVYHYSVMTADWLISEVSIIYHRLTL 678


>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
          Length = 586

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +1

Query: 214 YHGFHQFSRHSRHPRDAITAPLV--ETAISNFRHKLQLYPYQVNSKLMT*TTXKVSLSLA 387
           +H F + + H R+ R+ ITA        I   + K  + P Q +SK    T  K  +S  
Sbjct: 234 FHHFKRITEHMRYYRETITASATRRHVQIQVQKSKKAVKPPQAHSKAENMTFCKFCVSTT 293

Query: 388 S 390
           S
Sbjct: 294 S 294


>SB_4374| Best HMM Match : GCS (HMM E-Value=6.2)
          Length = 326

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 52  HHPPFISPRRHNG-SPSGNRHQQFPSQAS 135
           +HPP +    +N   P    H+ FP+QAS
Sbjct: 298 YHPPHLGSEENNPYGPLSREHRCFPAQAS 326


>SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)
          Length = 296

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
 Frame = +1

Query: 55  HPPFISPRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINN-QQSQLVPGFCAYHGFHQ 231
           H    +  RHN  P+  RH   P+      +    + + +NN  +   +     ++    
Sbjct: 177 HNSLPNTARHNSPPNTTRHNSLPNTTRHNSLHSTTRHNSLNNTTRHNSLTNTTRHNSLTN 236

Query: 232 FSRHSRHPRDAITAPLVETAISN 300
            +RH+  P  A    L  T   N
Sbjct: 237 TTRHNSLPNTARHNSLTNTTRHN 259


>SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)
          Length = 1953

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 18/79 (22%), Positives = 34/79 (43%)
 Frame = +1

Query: 58  PPFISPRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCAYHGFHQFS 237
           PP ++ R   G+ S   H Q PS +   P++ + + H  +   +Q+       H   Q +
Sbjct: 417 PPLVADRNQFGNYSNQYHAQVPSPSMADPVT-QTRTHPASPLTTQMAIILLIQH-LSQLN 474

Query: 238 RHSRHPRDAITAPLVETAI 294
              R  R+ I + L +  +
Sbjct: 475 EDDRLSREDIESLLQDAQL 493


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,707,841
Number of Sequences: 59808
Number of extensions: 270582
Number of successful extensions: 708
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)