Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021905X
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81461-8|CAB03839.1|  442|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr...    26   8.4  
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr...    26   8.4  
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr...    26   8.4  
AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine re...    26   8.4  

>Z81461-8|CAB03839.1|  442|Caenorhabditis elegans Hypothetical
           protein C04F12.10 protein.
          Length = 442

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 220 HDKRRSQGQADFVGCLCHELGIYLIWVKL--KLVTEI 116
           +DK+R     + V  L HELG + +W  L   ++TE+
Sbjct: 284 NDKKRGMNNDEVVAVLGHELGHWALWHTLINLVITEV 320


>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical protein
            M79.1c protein.
          Length = 1209

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 49   QHHPPFISPRRHNGSPSGNRHQQFPSQASTLPISGKFQ 162
            QHH PF     +N + S   H +    + T  +SG ++
Sbjct: 950  QHHRPFSLQCPNNSTSSAISHSEHADSSETSSLSGVYE 987


>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical protein
            M79.1b protein.
          Length = 1214

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 49   QHHPPFISPRRHNGSPSGNRHQQFPSQASTLPISGKFQ 162
            QHH PF     +N + S   H +    + T  +SG ++
Sbjct: 955  QHHRPFSLQCPNNSTSSAISHSEHADSSETSSLSGVYE 992


>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical protein
            M79.1a protein.
          Length = 1224

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 49   QHHPPFISPRRHNGSPSGNRHQQFPSQASTLPISGKFQ 162
            QHH PF     +N + S   H +    + T  +SG ++
Sbjct: 965  QHHRPFSLQCPNNSTSSAISHSEHADSSETSSLSGVYE 1002


>AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein40 protein.
          Length = 363

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +2

Query: 119 FRHKLQLYPY-QVNSKLMT*TTNKVSLSLASALIMAFTNLVDTLAIPETP*RLP*WKPPS 295
           FR     YP+ ++   LMT   N +  S+   L++        + I E P  +  WKPPS
Sbjct: 143 FRALFIRYPFNKIVISLMT-IKNSIRTSILITLLILPFWYTSFIKIRENPKWI--WKPPS 199

Query: 296 AISVTSFNFTHI 331
                S NFT I
Sbjct: 200 DCPGFSKNFTQI 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,254,999
Number of Sequences: 27780
Number of extensions: 193467
Number of successful extensions: 438
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)