Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021905X
         (393 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.18 
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   2.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
 Frame = +1

Query: 58  PPFISPRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVP----GFCAYHGF 225
           PP  S     G P G    Q PSQ    P SG  Q   +  QQ  L P     F   H  
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIHQMQQL-LQQHILSPTQLQSFMQQHSL 97

Query: 226 HQFSRHSRHPRDA 264
           +   +  +H +D+
Sbjct: 98  YLQQQQQQHHQDS 110



 Score = 22.2 bits (45), Expect = 2.2
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 270 GSPSGNRHQQFPSQASTLPISGKFQAHDINNQ 365
           G P G    Q PSQ    P SG  Q   +  Q
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQMQQLLQQ 80


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 208 RSQGQADFVGCLCHELGIYLIWVK 137
           ++ G  + VGC+C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92



 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/24 (25%), Positives = 12/24 (50%)
 Frame = -1

Query: 390 RSQGQADFXGCLCHELGIYLIWVK 319
           ++ G  +  GC+C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 35  HGFHANTIHRLYHRDAITAPLVETAISNFR 124
           HG+   T+HRL  R  + + +    I++ R
Sbjct: 205 HGYRCRTMHRL-TRQVVVSSVANVRIADHR 233


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 35  HGFHANTIHRLYHRDAITAPLVETAISNFR 124
           HG+   T+HRL  R  + + +    I++ R
Sbjct: 205 HGYRCRTMHRL-TRQVVVSSVANVRIADHR 233


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 76  RRHNG-SPSGNRHQQFPSQASTLP 144
           ++HN  SP+G+  Q   S AST P
Sbjct: 57  QQHNSPSPTGSSPQHSGSSASTSP 80



 Score = 21.8 bits (44), Expect = 2.9
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 258 RRHNG-SPSGNRHQQFPSQASTLP 326
           ++HN  SP+G+  Q   S AST P
Sbjct: 57  QQHNSPSPTGSSPQHSGSSASTSP 80


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 184 QSQLVPGFCAYHGFH 228
           Q+ L+P F  Y G H
Sbjct: 398 QNSLLPNFVGYKGKH 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,335
Number of Sequences: 438
Number of extensions: 2217
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)