Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021905X
         (393 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57610.1 68418.m07197 protein kinase family protein similar t...    28   2.0  
At4g38500.1 68417.m05444 expressed protein contains Pfam profile...    28   2.6  
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin...    28   2.6  
At1g67035.1 68414.m07623 expressed protein ; expression supporte...    28   2.6  
At3g56880.1 68416.m06327 VQ motif-containing protein contains PF...    27   4.5  
At2g02700.1 68415.m00210 DC1 domain-containing protein contains ...    27   4.5  
At5g44090.1 68418.m05394 calcium-binding EF hand family protein,...    27   6.0  
At4g30080.1 68417.m04278 transcriptional factor B3 family protei...    27   6.0  

>At5g57610.1 68418.m07197 protein kinase family protein similar to
           protein kinase [Glycine max] GI:170047, MAP3K delta-1
           protein kinase [Arabidopsis thaliana] GI:2253010;
           contains Pfam profile: PF00069 Eukaryotic protein kinase
           domain
          Length = 1054

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +1

Query: 61  PFISPRRHNGSPSGNRHQQFPSQAST----LPISGKFQAHDINNQQSQLVPGFCAYHGFH 228
           PF SPR H+G       Q+FPS  S+    +P  G+     ++    + V    ++H F+
Sbjct: 237 PFYSPR-HHGHHDPRTFQEFPSSPSSARYRMPY-GEIPDKGLDRMPEEYVRPQASHHPFY 294

Query: 229 QFSRH 243
           +   H
Sbjct: 295 EHQAH 299


>At4g38500.1 68417.m05444 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 499

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 58  PPFISPRRHNGSPSGNRHQQFPSQASTLPISGKFQ 162
           PP+  PRR+   P    H+ FP    ++ I GK +
Sbjct: 269 PPYDEPRRNGKVPKILTHRLFPEAQYSIWIDGKME 303


>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
           protein-related contains Pfam profiles PF03107: DC1
           domain, weak hit to PF00628: PHD-finger
          Length = 513

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 41  FHANTIHRLYHRDAITAPLVETAISNFRHKLQLY 142
           ++  T    YH++ + +PL  T  S+ +H LQ+Y
Sbjct: 16  YYCVTCDERYHKECVESPLEITYPSHPQHSLQIY 49


>At1g67035.1 68414.m07623 expressed protein ; expression supported
           by MPSS
          Length = 229

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 321 KLKLVTEIADGGFH*GSRYGVSGMARVSTKLVK 223
           KLKL+ +  D GF  GSRYG     R S   +K
Sbjct: 26  KLKLLVDNGDYGFERGSRYGEYARLRESKLRMK 58



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 139 KLKLVTEIADGGFH*GSRYG 80
           KLKL+ +  D GF  GSRYG
Sbjct: 26  KLKLLVDNGDYGFERGSRYG 45


>At3g56880.1 68416.m06327 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 245

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +1

Query: 1   QKSACPWLLRLAWLSRQHHPPFISPRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINN 180
           + SA P L   ++LS  H    I+     G+P+G+ H Q  +  +T  + G   A ++++
Sbjct: 176 RSSAVPTLDTSSFLSNHHQENIITDL---GAPTGSFHHQSSAGTTTANVGGGSSAVELDS 232

Query: 181 QQS 189
             S
Sbjct: 233 YPS 235


>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 499

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 68  YHRDAITAPLVETAISNFRHKLQLY 142
           YH++ + +PL     S+ +H LQLY
Sbjct: 152 YHKECVESPLEINYPSHVKHSLQLY 176


>At5g44090.1 68418.m05394 calcium-binding EF hand family protein,
           putative / protein phosphatase 2A 62 kDa B'' regulatory
           subunit, putative contains Pfam profile: PF00036 EF
           hand; identical to cDNA protein phosphatase 2A 62 kDa
           B'' regulatory subunit GI:5533378
          Length = 538

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +1

Query: 61  PFISPRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCAYHG 222
           P +SPR   GSP  +R +  PS  S L          +   + QL+P F   HG
Sbjct: 91  PPLSPRGSPGSPRFSRQKTSPSLQSPL--------KSVREPKRQLIPQFYFQHG 136


>At4g30080.1 68417.m04278 transcriptional factor B3 family protein
           contains Pfam profile: PF02362 B3 DNA binding domain
          Length = 670

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
 Frame = +1

Query: 100 GNRHQQFPSQASTLPISGK-FQAHDINNQQSQLVPGFCAYHGFHQFSRHSRHPRDAITAP 276
           G     F S +   P   K     D NN     VP +CA   F +   ++  P   I A 
Sbjct: 104 GEDSNGFESNSEKTPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAK 163

Query: 277 LVETAISNFRH 309
            V   +  FRH
Sbjct: 164 DVHGDVWKFRH 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,981,238
Number of Sequences: 28952
Number of extensions: 190389
Number of successful extensions: 534
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)