Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021904X
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   120   7e-29
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    76   2e-15
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    71   1e-13
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    69   2e-13
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    32   0.033
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   0.93 
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   1.2  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        27   1.2  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    27   1.6  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    26   2.2  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    26   2.9  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    24   8.7  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    24   8.7  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  120 bits (290), Expect = 7e-29
 Identities = 50/70 (71%), Positives = 59/70 (84%)
 Frame = +2

Query: 53  MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 232
           MREIVH+QAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 233 PRAILVDWSP 262
           PRA+LVD  P
Sbjct: 61  PRAVLVDLEP 70



 Score =  106 bits (255), Expect = 1e-24
 Identities = 44/59 (74%), Positives = 54/59 (91%)
 Frame = +1

Query: 253 LEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVIRKESES 429
           LEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDV+R+E+E+
Sbjct: 68  LEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEA 126


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 76.2 bits (179), Expect = 2e-15
 Identities = 32/69 (46%), Positives = 48/69 (69%)
 Frame = +2

Query: 56  REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 235
           REI+ LQAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 236 RAILVDWSP 262
           RAIL+D  P
Sbjct: 63  RAILIDLEP 71



 Score = 48.0 bits (109), Expect = 6e-07
 Identities = 19/60 (31%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
 Frame = +1

Query: 253 LEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDVIRKESE 426
           LEP  ++++ S  +G ++ P+N +  ++  GAGNNWA G Y+    + + ++D+I +E++
Sbjct: 69  LEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREAD 127


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 70.5 bits (165), Expect = 1e-13
 Identities = 28/59 (47%), Positives = 43/59 (72%)
 Frame = +1

Query: 253 LEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVIRKESES 429
           LEP  +D VR+GP+  +F P+  V G+  A NN+A+GHYT G E++DSVL+ IR+ +++
Sbjct: 74  LEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADN 132



 Score = 56.0 bits (129), Expect = 2e-09
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
 Frame = +2

Query: 53  MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 214
           MRE++ +  GQ G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 215 SGGKYVPRAILVDWSP 262
             GK+VPR+I VD  P
Sbjct: 61  GQGKFVPRSIYVDLEP 76


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 69.3 bits (162), Expect = 2e-13
 Identities = 28/59 (47%), Positives = 41/59 (69%)
 Frame = +1

Query: 253 LEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVIRKESES 429
           LEP  +D VR+GP+  +F P+  + G+  A NN+A+GHYT G ELVD V D IR+ +++
Sbjct: 70  LEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADN 128



 Score = 62.1 bits (144), Expect = 4e-11
 Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
 Frame = +2

Query: 53  MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGK 226
           MREI+ +  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 227 YVPRAILVDWSP 262
           YVPR+I VD  P
Sbjct: 61  YVPRSIYVDLEP 72


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 32.3 bits (70), Expect = 0.033
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +1

Query: 220 RQVRAPRHSRRLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGN 348
           R+V AP+H+RR   GT    RS     +FR ++  FGQ   GN
Sbjct: 486 REVFAPKHARR-RLGTRFHSRSSHRPSVFRDNSVAFGQLDNGN 527


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 25/96 (26%), Positives = 31/96 (32%)
 Frame = -3

Query: 344 PAPDCPKTKLSGRKICPKGPERTESMVPGSSRREWRGARTCRRRLHCSIH*CAPTASQSP 165
           P P CP      +K C  G    E+      R   R    C + L C  H C        
Sbjct: 667 PCPPCPYFV---KKRCLCGKHILENQP--CYRENVRCGELCNKLLSCKTHFCEKLCHPDG 721

Query: 164 HGRHRWGRCRARQR*SPRT*LQSGYHIGRPVDERFP 57
                  +   ++R       QS  H G P DER P
Sbjct: 722 ECESSCKKECGKRRMYCEHVCQSPCHAGHPCDERIP 757


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 92  NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 193
           N++G    E+++++  +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 355 AKGHYTEGAELVDSVLDVIRKESES 429
           A+GH   G ELV +  D +RK+SE+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSEN 207


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 286 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 387
           GP+G +F P  F+F  +G    NW+   Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 36  KITYTK*GKSFIYRPANVV 92
           +I+YT  G SFIYRP N++
Sbjct: 64  EISYT--GTSFIYRPGNII 80


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 339 AGLSEDEVVRTEDLSERSGADRVHGAGLQSTRMARG 232
           AG++ED  + T  + + +G++R     L+ +R+  G
Sbjct: 279 AGINEDHTLATLSIIDLAGSERATATKLRGSRLFEG 314


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 344 PAPDCPKTKLSGRKICPKGPERTESMVPGS 255
           P+   PK  L  R I P GPE  +  + GS
Sbjct: 20  PSTPPPKEVLHTRVIVPNGPEEIKLRLVGS 49


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = -2

Query: 399 DRVNELSTLCVVSLGPVVAGAGLSEDEVVRTEDLSERSGADRVHGAGLQSTRMARGT 229
           D V E++ L + + G  +   GL    V+R     E     + H   +    M RGT
Sbjct: 206 DHVKEITCLAISNDGRWIVTGGLDHRIVIRDSVTLEPQHCWKHHRDAVMGLAMRRGT 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,362
Number of Sequences: 5004
Number of extensions: 35107
Number of successful extensions: 110
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)