Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021904X
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   0.83 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.3  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   5.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.7  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 0.83
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 167 DSDLQLERINVYYNEASGGKYVPRAILVDWSPAPWTLSAP 286
           D+ L+   I  Y N+  GG++V   I   W+P  +  + P
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFVRDLI---WTPTVYVSNEP 108


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 191 CAPTASQSPHGRHRWGRCRARQ 126
           C+P   Q+P  R   GR R R+
Sbjct: 392 CSPPPRQTPPSRKESGRRRRRR 413


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = -3

Query: 359 LAQLLPAPDCPKTKLSGRKICPKGPERTESMVPGSSRREW 240
           +++ +   +  KT  + RK+C K  +  + ++ G  R E+
Sbjct: 23  MSKKMTIEEAKKTIKNLRKVCSKKNDTPKELLDGQFRGEF 62


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 339 AGLSEDEVVRTEDLSE 292
           AGL+E+EVV  + ++E
Sbjct: 62  AGLTEEEVVLAKTIAE 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,478
Number of Sequences: 438
Number of extensions: 2653
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)