Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021903
         (532 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.8  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.8  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   8.9  

>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 431 PTDYKSVPTIGELMKCIKVRVGT 363
           PT   +VP IG    CI   V +
Sbjct: 265 PTTSDAVPLIGTYFNCIMFMVAS 287


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 431 PTDYKSVPTIGELMKCIKVRVGT 363
           PT   +VP IG    CI   V +
Sbjct: 265 PTTSDAVPLIGTYFNCIMFMVAS 287


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +2

Query: 374 EPLYIS*VHRSSVPTYSQW 430
           +PLY+    + + P Y  W
Sbjct: 329 DPLYLKHEQQGAAPDYRHW 347


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,879
Number of Sequences: 336
Number of extensions: 3066
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12887571
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)