Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021903
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    28   1.00 
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   4.0  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   9.3  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    25   9.3  

>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 220 VLTVQLVDWK*LNHYYPHLQRPEVS 146
           ++ +QL+DW   N+Y  HL++ EV+
Sbjct: 212 LIIIQLIDWWQSNNYESHLKKGEVA 236


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 250 WYILQAPVLKVLTVQLVDWK*LNHYYPHL 164
           W I +   L V   +++DWK L+ Y  HL
Sbjct: 376 WLIERMMDLNVAEERMIDWKCLSEYANHL 404


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 25  LNFDIKYLLVSVKKAE 72
           ++FD KY+LVSV K++
Sbjct: 124 ISFDAKYVLVSVNKSQ 139


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 272 EDFLQDSWCFDDSRSGVMGSYRQEGQQSNQTYPP 373
           +DF    W     R  ++ S+  E  QS   +PP
Sbjct: 5   DDFSFKYWTIKVQRGSILKSHEMENLQSTLGFPP 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,479
Number of Sequences: 5004
Number of extensions: 45460
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)