Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021903
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0474 - 23202739-23203011,23203103-23203469,23203592-232039... 36 0.015
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582... 32 0.25
12_01_1048 + 10770461-10770612,10770721-10770730,10771457-107716... 30 1.3
03_05_0232 + 22174516-22174768,22175278-22175471,22175557-221756... 30 1.3
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 29 2.3
01_06_1331 + 36373059-36373338,36374190-36374263,36374530-363746... 29 2.3
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973... 28 5.4
06_03_0136 + 17056256-17056420,17056864-17057036,17057272-170572... 27 7.1
>02_04_0474 -
23202739-23203011,23203103-23203469,23203592-23203990,
23204060-23204397,23204558-23204782,23205025-23205073,
23205281-23205462
Length = 610
Score = 36.3 bits (80), Expect = 0.015
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +3
Query: 402 DRRYRLIVSGCTAGHSVLVSEEGEAYTFCRNACGQL 509
+R Y IV+G GHS++V+ +G+AY+F N GQL
Sbjct: 217 ERNYSRIVAG--PGHSIVVTTKGDAYSFGANCWGQL 250
>04_04_1475 +
33856351-33856582,33857614-33857781,33858156-33858261,
33858391-33858442,33858525-33858642,33858736-33858766,
33858962-33858985,33859075-33859199,33860087-33860168,
33860319-33860441,33860539-33860592,33860669-33860738,
33861276-33861309,33861824-33862170
Length = 521
Score = 32.3 bits (70), Expect = 0.25
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = +3
Query: 408 RYRLIVSGCTAGHSVLVSEEGEAYTFCRNACGQLAS 515
RY++I + H+V+V+++G++++F N GQL +
Sbjct: 93 RYKVIKASVGRNHTVVVTDDGKSFSFGHNKHGQLGT 128
>12_01_1048 +
10770461-10770612,10770721-10770730,10771457-10771624,
10771668-10772017,10772107-10772508,10772940-10773318,
10773801-10774046
Length = 568
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 441 GHSVLVSEEGEAYTFCRNACGQL 509
GHS+ V+ G YTF N+ GQL
Sbjct: 190 GHSIAVTTSGAVYTFGSNSSGQL 212
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 414 RLIVSGCTAGHSVLVSEEGEAYTFCRNACGQL 509
R+I + AG ++LVS+ G Y F +++ G++
Sbjct: 233 RIIQAAAGAGRTMLVSDAGRVYAFGKDSFGEV 264
>03_05_0232 +
22174516-22174768,22175278-22175471,22175557-22175604,
22176707-22176784,22178073-22178145,22178406-22178577,
22179652-22180083,22180209-22180400,22180696-22180771
Length = 505
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 405 RRYRLIVSGCTAGHSVLVSEEGEAYTFCRNACGQLASET 521
+ R I C GH+ V+ +G YT+ N GQL T
Sbjct: 58 KNLRWIDVACGRGHTAAVASDGSLYTWGANDFGQLGDGT 96
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 414 RLIVSGCTAGHSVLVSEEGEAYTFCRNACGQL 509
+++ C H+ +SE GE YT+ + GQL
Sbjct: 253 KIVRVSCGEYHTAAISENGEVYTWGLGSMGQL 284
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 202 PAEQSKPSTPEPEECT 249
PAE++KP+ PEPEE T
Sbjct: 204 PAEEAKPAEPEPEEKT 219
>01_06_1331 +
36373059-36373338,36374190-36374263,36374530-36374699,
36374731-36374822,36375087-36375323,36375922-36375980,
36376462-36376644,36377347-36377437,36377959-36378002,
36378085-36378207
Length = 450
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 366 THPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFCRNACGQL 509
T P L ++ R + C A HS ++++EGE + + N GQL
Sbjct: 366 TVPKLVDASSLENKNARAV--SCGARHSAIITDEGEVFCWGWNKYGQL 411
>03_06_0716 -
35695158-35696795,35697075-35697288,35697290-35697372,
35697695-35697865
Length = 701
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +2
Query: 281 LQDSWCFDDSRSGVMGSYRQEGQQSNQTYPPEPLYIS*VHRSSVPTYSQWVHCRTFS 451
L D WC D S V+ Y EG + +T EP ++ + + P + Q VH +FS
Sbjct: 360 LFDKWCTDKKNSCVIPGYVVEGTLA-KTIINEPREVTLANGLTAPLHMQ-VHYISFS 414
>06_03_0136 +
17056256-17056420,17056864-17057036,17057272-17057297,
17057524-17057922,17058190-17058265,17058432-17058507,
17058930-17059013,17059446-17059570,17060146-17060389,
17060968-17061031,17061218-17061726
Length = 646
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +2
Query: 206 LNSQNLQHRSLKNVPLIT*GTTEDFLQDSWCFDDSRSGVMGSYRQEGQQSNQTYPPEPLY 385
+N+ QH +N + G + + FDD R G++G +E + PP L+
Sbjct: 406 INNARKQHNMKRNQSNVNRGQNRYYQKTPGKFDDLRPGILGPETRECLGIGENDPPPWLH 465
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,757,166
Number of Sequences: 37544
Number of extensions: 318871
Number of successful extensions: 752
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -