SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021903
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0474 - 23202739-23203011,23203103-23203469,23203592-232039...    36   0.015
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582...    32   0.25 
12_01_1048 + 10770461-10770612,10770721-10770730,10771457-107716...    30   1.3  
03_05_0232 + 22174516-22174768,22175278-22175471,22175557-221756...    30   1.3  
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444...    29   2.3  
01_06_1331 + 36373059-36373338,36374190-36374263,36374530-363746...    29   2.3  
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973...    28   5.4  
06_03_0136 + 17056256-17056420,17056864-17057036,17057272-170572...    27   7.1  

>02_04_0474 -
           23202739-23203011,23203103-23203469,23203592-23203990,
           23204060-23204397,23204558-23204782,23205025-23205073,
           23205281-23205462
          Length = 610

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = +3

Query: 402 DRRYRLIVSGCTAGHSVLVSEEGEAYTFCRNACGQL 509
           +R Y  IV+G   GHS++V+ +G+AY+F  N  GQL
Sbjct: 217 ERNYSRIVAG--PGHSIVVTTKGDAYSFGANCWGQL 250


>04_04_1475 +
           33856351-33856582,33857614-33857781,33858156-33858261,
           33858391-33858442,33858525-33858642,33858736-33858766,
           33858962-33858985,33859075-33859199,33860087-33860168,
           33860319-33860441,33860539-33860592,33860669-33860738,
           33861276-33861309,33861824-33862170
          Length = 521

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = +3

Query: 408 RYRLIVSGCTAGHSVLVSEEGEAYTFCRNACGQLAS 515
           RY++I +     H+V+V+++G++++F  N  GQL +
Sbjct: 93  RYKVIKASVGRNHTVVVTDDGKSFSFGHNKHGQLGT 128


>12_01_1048 +
           10770461-10770612,10770721-10770730,10771457-10771624,
           10771668-10772017,10772107-10772508,10772940-10773318,
           10773801-10774046
          Length = 568

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 441 GHSVLVSEEGEAYTFCRNACGQL 509
           GHS+ V+  G  YTF  N+ GQL
Sbjct: 190 GHSIAVTTSGAVYTFGSNSSGQL 212



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 414 RLIVSGCTAGHSVLVSEEGEAYTFCRNACGQL 509
           R+I +   AG ++LVS+ G  Y F +++ G++
Sbjct: 233 RIIQAAAGAGRTMLVSDAGRVYAFGKDSFGEV 264


>03_05_0232 +
           22174516-22174768,22175278-22175471,22175557-22175604,
           22176707-22176784,22178073-22178145,22178406-22178577,
           22179652-22180083,22180209-22180400,22180696-22180771
          Length = 505

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 405 RRYRLIVSGCTAGHSVLVSEEGEAYTFCRNACGQLASET 521
           +  R I   C  GH+  V+ +G  YT+  N  GQL   T
Sbjct: 58  KNLRWIDVACGRGHTAAVASDGSLYTWGANDFGQLGDGT 96



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 414 RLIVSGCTAGHSVLVSEEGEAYTFCRNACGQL 509
           +++   C   H+  +SE GE YT+   + GQL
Sbjct: 253 KIVRVSCGEYHTAAISENGEVYTWGLGSMGQL 284


>01_06_1519 +
           37942389-37943702,37944142-37944266,37944358-37944499,
           37944602-37944848,37946139-37946196,37947629-37947913,
           37947988-37948120
          Length = 767

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 202 PAEQSKPSTPEPEECT 249
           PAE++KP+ PEPEE T
Sbjct: 204 PAEEAKPAEPEPEEKT 219


>01_06_1331 +
           36373059-36373338,36374190-36374263,36374530-36374699,
           36374731-36374822,36375087-36375323,36375922-36375980,
           36376462-36376644,36377347-36377437,36377959-36378002,
           36378085-36378207
          Length = 450

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 366 THPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFCRNACGQL 509
           T P L       ++  R +   C A HS ++++EGE + +  N  GQL
Sbjct: 366 TVPKLVDASSLENKNARAV--SCGARHSAIITDEGEVFCWGWNKYGQL 411


>03_06_0716 -
           35695158-35696795,35697075-35697288,35697290-35697372,
           35697695-35697865
          Length = 701

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +2

Query: 281 LQDSWCFDDSRSGVMGSYRQEGQQSNQTYPPEPLYIS*VHRSSVPTYSQWVHCRTFS 451
           L D WC D   S V+  Y  EG  + +T   EP  ++  +  + P + Q VH  +FS
Sbjct: 360 LFDKWCTDKKNSCVIPGYVVEGTLA-KTIINEPREVTLANGLTAPLHMQ-VHYISFS 414


>06_03_0136 +
           17056256-17056420,17056864-17057036,17057272-17057297,
           17057524-17057922,17058190-17058265,17058432-17058507,
           17058930-17059013,17059446-17059570,17060146-17060389,
           17060968-17061031,17061218-17061726
          Length = 646

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = +2

Query: 206 LNSQNLQHRSLKNVPLIT*GTTEDFLQDSWCFDDSRSGVMGSYRQEGQQSNQTYPPEPLY 385
           +N+   QH   +N   +  G    + +    FDD R G++G   +E     +  PP  L+
Sbjct: 406 INNARKQHNMKRNQSNVNRGQNRYYQKTPGKFDDLRPGILGPETRECLGIGENDPPPWLH 465


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,757,166
Number of Sequences: 37544
Number of extensions: 318871
Number of successful extensions: 752
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -