BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021903 (532 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_04_0474 - 23202739-23203011,23203103-23203469,23203592-232039... 36 0.015 04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582... 32 0.25 12_01_1048 + 10770461-10770612,10770721-10770730,10771457-107716... 30 1.3 03_05_0232 + 22174516-22174768,22175278-22175471,22175557-221756... 30 1.3 01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 29 2.3 01_06_1331 + 36373059-36373338,36374190-36374263,36374530-363746... 29 2.3 03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973... 28 5.4 06_03_0136 + 17056256-17056420,17056864-17057036,17057272-170572... 27 7.1 >02_04_0474 - 23202739-23203011,23203103-23203469,23203592-23203990, 23204060-23204397,23204558-23204782,23205025-23205073, 23205281-23205462 Length = 610 Score = 36.3 bits (80), Expect = 0.015 Identities = 17/36 (47%), Positives = 25/36 (69%) Frame = +3 Query: 402 DRRYRLIVSGCTAGHSVLVSEEGEAYTFCRNACGQL 509 +R Y IV+G GHS++V+ +G+AY+F N GQL Sbjct: 217 ERNYSRIVAG--PGHSIVVTTKGDAYSFGANCWGQL 250 >04_04_1475 + 33856351-33856582,33857614-33857781,33858156-33858261, 33858391-33858442,33858525-33858642,33858736-33858766, 33858962-33858985,33859075-33859199,33860087-33860168, 33860319-33860441,33860539-33860592,33860669-33860738, 33861276-33861309,33861824-33862170 Length = 521 Score = 32.3 bits (70), Expect = 0.25 Identities = 12/36 (33%), Positives = 25/36 (69%) Frame = +3 Query: 408 RYRLIVSGCTAGHSVLVSEEGEAYTFCRNACGQLAS 515 RY++I + H+V+V+++G++++F N GQL + Sbjct: 93 RYKVIKASVGRNHTVVVTDDGKSFSFGHNKHGQLGT 128 >12_01_1048 + 10770461-10770612,10770721-10770730,10771457-10771624, 10771668-10772017,10772107-10772508,10772940-10773318, 10773801-10774046 Length = 568 Score = 29.9 bits (64), Expect = 1.3 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +3 Query: 441 GHSVLVSEEGEAYTFCRNACGQL 509 GHS+ V+ G YTF N+ GQL Sbjct: 190 GHSIAVTTSGAVYTFGSNSSGQL 212 Score = 28.3 bits (60), Expect = 4.1 Identities = 11/32 (34%), Positives = 21/32 (65%) Frame = +3 Query: 414 RLIVSGCTAGHSVLVSEEGEAYTFCRNACGQL 509 R+I + AG ++LVS+ G Y F +++ G++ Sbjct: 233 RIIQAAAGAGRTMLVSDAGRVYAFGKDSFGEV 264 >03_05_0232 + 22174516-22174768,22175278-22175471,22175557-22175604, 22176707-22176784,22178073-22178145,22178406-22178577, 22179652-22180083,22180209-22180400,22180696-22180771 Length = 505 Score = 29.9 bits (64), Expect = 1.3 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +3 Query: 405 RRYRLIVSGCTAGHSVLVSEEGEAYTFCRNACGQLASET 521 + R I C GH+ V+ +G YT+ N GQL T Sbjct: 58 KNLRWIDVACGRGHTAAVASDGSLYTWGANDFGQLGDGT 96 Score = 27.9 bits (59), Expect = 5.4 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +3 Query: 414 RLIVSGCTAGHSVLVSEEGEAYTFCRNACGQL 509 +++ C H+ +SE GE YT+ + GQL Sbjct: 253 KIVRVSCGEYHTAAISENGEVYTWGLGSMGQL 284 >01_06_1519 + 37942389-37943702,37944142-37944266,37944358-37944499, 37944602-37944848,37946139-37946196,37947629-37947913, 37947988-37948120 Length = 767 Score = 29.1 bits (62), Expect = 2.3 Identities = 11/16 (68%), Positives = 14/16 (87%) Frame = +1 Query: 202 PAEQSKPSTPEPEECT 249 PAE++KP+ PEPEE T Sbjct: 204 PAEEAKPAEPEPEEKT 219 >01_06_1331 + 36373059-36373338,36374190-36374263,36374530-36374699, 36374731-36374822,36375087-36375323,36375922-36375980, 36376462-36376644,36377347-36377437,36377959-36378002, 36378085-36378207 Length = 450 Score = 29.1 bits (62), Expect = 2.3 Identities = 15/48 (31%), Positives = 24/48 (50%) Frame = +3 Query: 366 THPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFCRNACGQL 509 T P L ++ R + C A HS ++++EGE + + N GQL Sbjct: 366 TVPKLVDASSLENKNARAV--SCGARHSAIITDEGEVFCWGWNKYGQL 411 >03_06_0716 - 35695158-35696795,35697075-35697288,35697290-35697372, 35697695-35697865 Length = 701 Score = 27.9 bits (59), Expect = 5.4 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = +2 Query: 281 LQDSWCFDDSRSGVMGSYRQEGQQSNQTYPPEPLYIS*VHRSSVPTYSQWVHCRTFS 451 L D WC D S V+ Y EG + +T EP ++ + + P + Q VH +FS Sbjct: 360 LFDKWCTDKKNSCVIPGYVVEGTLA-KTIINEPREVTLANGLTAPLHMQ-VHYISFS 414 >06_03_0136 + 17056256-17056420,17056864-17057036,17057272-17057297, 17057524-17057922,17058190-17058265,17058432-17058507, 17058930-17059013,17059446-17059570,17060146-17060389, 17060968-17061031,17061218-17061726 Length = 646 Score = 27.5 bits (58), Expect = 7.1 Identities = 15/60 (25%), Positives = 26/60 (43%) Frame = +2 Query: 206 LNSQNLQHRSLKNVPLIT*GTTEDFLQDSWCFDDSRSGVMGSYRQEGQQSNQTYPPEPLY 385 +N+ QH +N + G + + FDD R G++G +E + PP L+ Sbjct: 406 INNARKQHNMKRNQSNVNRGQNRYYQKTPGKFDDLRPGILGPETRECLGIGENDPPPWLH 465 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,757,166 Number of Sequences: 37544 Number of extensions: 318871 Number of successful extensions: 752 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 722 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 752 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1178343540 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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