Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021903
         (532 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37557| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_48230| Best HMM Match : DUF152 (HMM E-Value=1.5)                    29   2.4  
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   28   4.1  
SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_45686| Best HMM Match : T-box (HMM E-Value=0)                       27   9.5  
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)                 27   9.5  
SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)                  27   9.5  

>SB_37557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 230 RSLKNVPLIT*GTTE-DFLQDSWCFDDSRSGVMGSYRQEGQQSNQTYPPEPLYIS 391
           R LK VP+I  GT E D    S C     SG+ GS   E ++ +   PP   YIS
Sbjct: 80  RMLKQVPMIASGTQELDNYYASIC-TPGPSGIGGSPDNEDEEEDPGTPPPVTYIS 133


>SB_48230| Best HMM Match : DUF152 (HMM E-Value=1.5)
          Length = 579

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 337 PGGTTIQPNVPTRTFIHFISSPIVG 411
           PGGT   P+VPT+  ++  S+P+ G
Sbjct: 264 PGGTATIPSVPTQRVVYDQSAPLAG 288


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 414 RLIVSGCTAGHSVLVSEEGEAYTFCRNACGQL 509
           ++I   C + HS  V+ EGE YT+ R   G+L
Sbjct: 596 QVIRISCGSTHSAAVTSEGELYTWGRGNYGRL 627


>SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 422 SQWVHCRTFSFGVRRGRSLHV 484
           +QW +CR   + VRR R+L V
Sbjct: 662 TQWSYCRVVGYSVRRSRNLMV 682


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 414 RLIVSGCTAGHSVLVSEEGEAYTFCRNACGQL 509
           +++V+ C A  + +V++ G  YTF +   GQL
Sbjct: 370 QVVVAACGAEFTAVVTKNGSVYTFGQGNQGQL 401


>SB_45686| Best HMM Match : T-box (HMM E-Value=0)
          Length = 947

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = +3

Query: 294 GVLMIAGLVSWDLTARRDNNPTKRTHPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGE 473
           G  ++  ++S++     +N+     H  L++ HK+  R + +     TA    L SEE +
Sbjct: 696 GEQLLKQIISFEKVKLTNNDTDHNGHLILHSMHKYKPRVHLMRKRDHTASIVNLNSEEVK 755

Query: 474 AYTF 485
            +TF
Sbjct: 756 TFTF 759


>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
          Length = 506

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 429 GCTAGHSVLVSEE-GEAYTFCRNACGQLASETR 524
           GC AG +    E  G AY+ C + CG   + TR
Sbjct: 158 GCRAGFTGTCCEHVGGAYSDCSHQCGNSGTRTR 190


>SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)
          Length = 595

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 408 RYRLIVSGCTAGHSVLVSEEGEAYTFCRNACGQLAS 515
           RYR++       HS ++ E G  +T   N  GQL S
Sbjct: 308 RYRVVDMALGPTHSAVLVEPGHVHTLGSNQDGQLGS 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,880,084
Number of Sequences: 59808
Number of extensions: 346604
Number of successful extensions: 841
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)