Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021903
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83115-1|CAB05555.1|  178|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    28   4.8  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    28   4.8  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical ...    27   6.3  
AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical ...    27   6.3  
AF077539-1|AAK84580.2|  550|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z83115-1|CAB05555.1|  178|Caenorhabditis elegans Hypothetical
           protein K11D2.1 protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 432 CTAGHSVLVSEEGEAYTFCRNACGQLASE 518
           C   H+V ++E G+AYT+  N  GQL  +
Sbjct: 140 CGGWHTVALTEGGDAYTWGWNRYGQLGKD 168


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 379 FIHFISSPIVGTDL*SVGALQDIQFWCPKREKPTRFVAMRVVNWLRR 519
           ++H++S  +V       GA+Q+++FW     +  R  A+ VV  L R
Sbjct: 302 YLHYVSFDLVS------GAIQELKFWLQSENEQYRKEAVTVVGMLTR 342


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 379 FIHFISSPIVGTDL*SVGALQDIQFWCPKREKPTRFVAMRVVNWLRR 519
           ++H++S  +V       GA+Q+++FW     +  R  A+ VV  L R
Sbjct: 302 YLHYVSFDLVS------GAIQELKFWLQSENEQYRKEAVTVVGMLTR 342


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 308  SRSGVMGSYRQEGQQSNQTYPPE 376
            SRSG+ G   Q+GQQS Q   P+
Sbjct: 3325 SRSGLGGGIGQQGQQSQQPQQPQ 3347


>AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1b protein.
          Length = 578

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 354 PTKRTHPNLYTFHKFTDRRYRLIVSGCTAGHS-VLVSEEGEAY-TFCRNAC 500
           PT++T P L    K  + +  L+V G  A HS ++++E  E Y  FC   C
Sbjct: 305 PTEKTMPQLAAQLKKHNIQALLLVGGFEAYHSTIILAENREKYPEFCIPMC 355


>AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1a protein.
          Length = 814

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 354 PTKRTHPNLYTFHKFTDRRYRLIVSGCTAGHS-VLVSEEGEAY-TFCRNAC 500
           PT++T P L    K  + +  L+V G  A HS ++++E  E Y  FC   C
Sbjct: 508 PTEKTMPQLAAQLKKHNIQALLLVGGFEAYHSTIILAENREKYPEFCIPMC 558


>AF077539-1|AAK84580.2|  550|Caenorhabditis elegans Hypothetical
           protein T25D3.4 protein.
          Length = 550

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 380 LYIS*VHRSSVPTYSQWVHCRTFSFGVRRGRSLHVLSQCVWSTGFG 517
           +YI  V   SV   + ++HC T  FG +   +L ++ Q +  T +G
Sbjct: 327 MYIGLVGILSVVAQTGFLHCLTSRFGTKHTITLGLIFQLIQLTWYG 372


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,371,290
Number of Sequences: 27780
Number of extensions: 262998
Number of successful extensions: 600
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)