BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021903 (532 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6 EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6 EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6 DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.6 AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 4.5 AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 4.5 AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 4.5 AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 4.5 AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 4.5 AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 4.5 AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 21 7.9 >EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 3 protein. Length = 461 Score = 22.6 bits (46), Expect = 2.6 Identities = 10/25 (40%), Positives = 12/25 (48%) Frame = -3 Query: 437 SAPTDYKSVPTIGELMKCIKVRVGT 363 S PT +VP IG CI V + Sbjct: 246 SMPTTSDAVPLIGSYFNCIMFMVAS 270 >EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 2 protein. Length = 461 Score = 22.6 bits (46), Expect = 2.6 Identities = 10/25 (40%), Positives = 12/25 (48%) Frame = -3 Query: 437 SAPTDYKSVPTIGELMKCIKVRVGT 363 S PT +VP IG CI V + Sbjct: 246 SMPTTSDAVPLIGSYFNCIMFMVAS 270 >EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 1 protein. Length = 461 Score = 22.6 bits (46), Expect = 2.6 Identities = 10/25 (40%), Positives = 12/25 (48%) Frame = -3 Query: 437 SAPTDYKSVPTIGELMKCIKVRVGT 363 S PT +VP IG CI V + Sbjct: 246 SMPTTSDAVPLIGSYFNCIMFMVAS 270 >DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 22.6 bits (46), Expect = 2.6 Identities = 10/25 (40%), Positives = 12/25 (48%) Frame = -3 Query: 437 SAPTDYKSVPTIGELMKCIKVRVGT 363 S PT +VP IG CI V + Sbjct: 314 SMPTTSDAVPLIGSYFNCIMFMVAS 338 >AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 21.8 bits (44), Expect = 4.5 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = +2 Query: 299 FDDSRSGVMGSYRQEGQQS 355 ++DSR SYR +G++S Sbjct: 234 YEDSRHEDRNSYRNDGERS 252 >AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 21.8 bits (44), Expect = 4.5 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = +2 Query: 299 FDDSRSGVMGSYRQEGQQS 355 ++DSR SYR +G++S Sbjct: 234 YEDSRHEDRNSYRNDGERS 252 >AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 21.8 bits (44), Expect = 4.5 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = +2 Query: 299 FDDSRSGVMGSYRQEGQQS 355 ++DSR SYR +G++S Sbjct: 234 YEDSRHEDRNSYRNDGERS 252 >AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 21.8 bits (44), Expect = 4.5 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = +2 Query: 299 FDDSRSGVMGSYRQEGQQS 355 ++DSR SYR +G++S Sbjct: 234 YEDSRHEDRNSYRNDGERS 252 >AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. Length = 400 Score = 21.8 bits (44), Expect = 4.5 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = +2 Query: 299 FDDSRSGVMGSYRQEGQQS 355 ++DSR SYR +G++S Sbjct: 234 YEDSRHEDRNSYRNDGERS 252 >AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex determiner protein. Length = 401 Score = 21.8 bits (44), Expect = 4.5 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = +2 Query: 299 FDDSRSGVMGSYRQEGQQS 355 ++DSR SYR +G++S Sbjct: 234 YEDSRHEDRNSYRNDGERS 252 >AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 21.0 bits (42), Expect = 7.9 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = +2 Query: 299 FDDSRSGVMGSYRQEGQQS 355 ++DSR SYR +G++S Sbjct: 234 YEDSRHEDGNSYRNDGERS 252 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 150,282 Number of Sequences: 438 Number of extensions: 3106 Number of successful extensions: 12 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12 length of database: 146,343 effective HSP length: 54 effective length of database: 122,691 effective search space used: 14968302 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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