Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021903
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   4.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   4.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   4.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   4.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   4.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   4.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   7.9  

>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 437 SAPTDYKSVPTIGELMKCIKVRVGT 363
           S PT   +VP IG    CI   V +
Sbjct: 246 SMPTTSDAVPLIGSYFNCIMFMVAS 270


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 437 SAPTDYKSVPTIGELMKCIKVRVGT 363
           S PT   +VP IG    CI   V +
Sbjct: 246 SMPTTSDAVPLIGSYFNCIMFMVAS 270


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 437 SAPTDYKSVPTIGELMKCIKVRVGT 363
           S PT   +VP IG    CI   V +
Sbjct: 246 SMPTTSDAVPLIGSYFNCIMFMVAS 270


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 437 SAPTDYKSVPTIGELMKCIKVRVGT 363
           S PT   +VP IG    CI   V +
Sbjct: 314 SMPTTSDAVPLIGSYFNCIMFMVAS 338


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 299 FDDSRSGVMGSYRQEGQQS 355
           ++DSR     SYR +G++S
Sbjct: 234 YEDSRHEDRNSYRNDGERS 252


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 299 FDDSRSGVMGSYRQEGQQS 355
           ++DSR     SYR +G++S
Sbjct: 234 YEDSRHEDRNSYRNDGERS 252


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 299 FDDSRSGVMGSYRQEGQQS 355
           ++DSR     SYR +G++S
Sbjct: 234 YEDSRHEDRNSYRNDGERS 252


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 299 FDDSRSGVMGSYRQEGQQS 355
           ++DSR     SYR +G++S
Sbjct: 234 YEDSRHEDRNSYRNDGERS 252


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 299 FDDSRSGVMGSYRQEGQQS 355
           ++DSR     SYR +G++S
Sbjct: 234 YEDSRHEDRNSYRNDGERS 252


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 299 FDDSRSGVMGSYRQEGQQS 355
           ++DSR     SYR +G++S
Sbjct: 234 YEDSRHEDRNSYRNDGERS 252


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 299 FDDSRSGVMGSYRQEGQQS 355
           ++DSR     SYR +G++S
Sbjct: 234 YEDSRHEDGNSYRNDGERS 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,282
Number of Sequences: 438
Number of extensions: 3106
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)